Gene detail

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Gene detail information of Glyur001839s00033720.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38280.2	0	AMP deaminase, putative / myoadenylate deaminase, putative
NR	XP_003604724.1	0	AMP deaminase [Medicago truncatula]
COG	YP_661794.1	7.00E-07	adenosine deaminase [Pseudoalteromonas atlantica T6c]
Swissprot	tr\|O80452\|AMPD_ARATH	0	AMP deaminase
trEMBL	tr\|G7JQ45\|G7JQ45_MEDTR	0	AMP deaminase {ECO:0000313\|EMBL:AES86921.1}

Sequence

Transcript Sequence

>Glyur001839s00033720.1
TGCGTCGTTCGTATATAAAAAACAGCAGAGCGAACCACACTTGTCTCCATTTAGCACAGAGCTTCACACTCAGTGTTTTGTTTTCTTATCATTCATTATTCCATAGCATAATAATTATAGCACTATCAACTCACTGTTTCAGTAGGGTTTTCTGTTTTATCACCTTTCTCTCTTCACCAAACAGAAAACGATTACGGTTATAGACAGAGAAACAACTCGAAGAGAGAGAAAGTGAGAGGAGAAAGAAAAAGCGTTAATGGATGCGCACGCGGTGCATTTGGCCATGGCGGCGCTCGTCGGAGCTTCCGTAGTGGCGGTGTCGGCGTACTACATGCACCGTAAGACGCTAGCGCAGCTGCTGGAGTTCGCTCGCACGGTCGAGAGGGAGAGGGAGAAGGACGGCGGCTCGGACGTCGGCGATTCGCCGCTGCATTCGAGGAGGCGCCGCGGTGGCTCGAGGAGGAGGGGGAGTGGCGGTTACAGGCGTGGTTCGGCGTCGCTGCCGGATGTCACGGCGATCTCCGGCGACGGAGATGAGAAGCGTAACGGACCGCTTCACGTCGAAGGGATCCCGGCAGGGCTGCCGCGGGTGCACACGCTCCGTGAAGAGAAATATTTTAAGACCAACTTCTCCCAAGTCTCCTGTTGCAAGTGCTAGTGCCTTTGAAAGTGTAGAGGGATCAGATGATGAAGATAATGTGACAGACAGAGCTGAACTGGATACTACATATCTGCACACGAATGGAAATGTAGGGGAAGAAGGTAAAAACCCATACGAGACTTTGCCTAATCATGTTAATACTAATGGAGAGCAGATGGCAATCGCTGCTTCAAGTATGATCCGTTCTCATAGTGTTTCTGGTGACCTGCATGGTGTGCAGCCTGACCCAATAGCAGCTGACATTCTGAGGAAAGAGCCAGAGCAAGAGATATTTGCTCGATTGAAAATTGCTCCTATCGAGGCTCCATCACCTGATGAAGTTGAATCCTATGTGGTTCTTCAAGAATGCCTTGAAATGAGGAAAAGATATGTTTTTAGAGAAGCAGTTGCTCCGTGGGAGAAAGAAGTTATATCTGACCCCTGTACTCCAAAGCCTAACCCAGATCCATTCTTTTACACCGCTGAAGGAAAGTCTGATCATTACTTTGAGATGCAGGATGGAGTTATTCATGTATATCCAAATAGGGACTCCAAAGAAGAGCTTTTTCCTGTTGCCGATGCAACTACATTTTTCACTGACCTCCATCAGATACTTCGAGTTATAGCAGCAGGAAATATCAGAACTTTATGCCATCATAGGCTTAATCTTCTAGAACAAAAATTCAATCTTCATTTGATGCTAAATGCGGATAGGGAATTTCTTGCCCAGAAAAGTGCTCCACATCGAGACTTCTATAATGTGAGAAAAGTGGATACACATGTCCACCATTCAGCATGCATGAATCAGAAACATCTTTTAAGATTCATAAAGTCAAAGCTGAGGAAAGAGCCTGATGAGGTTGTAATATTTCGAGATGGAACATATCTGACATTGAAAGAGGTTTTTGAGAGTCTGGATTTAACTGGATATGATCTCAATGTTGACCTTTTGGACGTTCACGCAGACAAGAGTACATTTCATCGCTTTGACAAGTTCAATCTTAAATACAATCCTTGTGGTCAAAGTAGGCTCAGGGAGATATTCTTGAAGCAGGATAATCTCATTCAAGGTCGTTTTCTTGGTGAGCTGACAAAGCAAGTGTTTTCTGATCTCGTTGCCAGTAAATATCAGATGGCTGAATATAGAATATCAATATATGGTAGGAAGCAAAGTGAGTGGGACCAACTAGCCAGTTGGATAGTGAATAATGACTTGTACAGTGAGAATGTTGTTTGGTTGATTCAGCTTCCACGATTGTATAATGTGTACAGAGAAATGGGAATTGTGACCTCATTCCAGAACATGCTTGACAATATCTTTATTCCACTTTTTGAAGTTACTGTTGACCCTGATTCACACCCTCAGCTGCATGTTTTCTTGAAACAGGTTGTTGGGTTGGATTTGGTGGATGATGAAAGCAAACCTGAAAGACGACCAACAAAACACATGCCTACACCTGCACAATGGACTAATGTATTCAATCCAGCATATTCATACTATGTGTATTACTGTTATGCAAATCTTTACACCTTAAACAAGCTTCGTGAATCAAAGGGAATGACTACAATCAAATTCCGTCCACATTCTGGAGAGGCTGGTGATATTGACCACCTTGCTGCTACCTTTCTTATTGCTCATAACATTGCACATGGAATCAATTTGAGAAAATCTCCCGTGCTTCAATATTTATATTATTTGGCCCAGATTGGACTGGCAATGTCTCCTCTGAGCAATAACTCCCTATTCTTAGACTACCATCGGAATCCTTTTCCAGTGTTCTTCTTACGGGGTTTGAATGTATCACTGTCTACTGATGATCCACTCCAAATTCACTTAACAAAGGAACCATTGGTTGAAGAATATAGCATAGCTGCATCTGTGTGGAAGTTGAGCTCATGTGATTTATGTGAAATTGCCCGTAATTCGGTTTATCAATCAGGTTTCTCACATGCCTTAAAGTCACATTGGATTGGTAAGGAATACTACAAAAGCGGGCCAAATGGAAACGACATTCACAGAACAAATGTTCCTCACATTCGATTGGAATTCCGTGACACGATATGGAGAGACGAGATGCAGCAGGTTTATTTGGGCAAAGCCATCATTCCTGCAGAAATAGAGAAATAATGTGCCAGAGGCCTGTATTTCATACCTGAACAATGGAGGTTGTGAACAGGGAGAATGTGAGTTCCTATAACCCATCCAGCATCAGAGAGATAATACTAAGGCTAAAGACTCAAGATATGACCCATGTGAGTTCACTTGTTACAGCACTGGTTCGGTGATATGAACCAGATATATAGTATAGATAACTCAAGATAACTGAGCTTGAGCACCGAGCAAGGTTTACAGCTAAAAAATCAACATAGCCCTGGGAAGTGTTTTCTTATATTTATTTTGGCCAGAATTAAAATGAGAAGGGTGGGTCGGTAATAATTCTGAGCAATTATTGATGCCTGTTGCTGTTACAAATATATGATAATGTGATCCTTCGAAAGGAGACAAATTCTCTCAATTTTGGTTACTAAGTGCCTGTTAGTTGAAAGCTGTGAGGGACCTTTTAAGTTTTACCATACATGTACGACATGCCATGGCAGAGCTAGAGTGTTGAGTTAGCCTTGTGCTGTTTTACGTTAAATAATATGGACAAGTCATAATATTTTTTTTTTGGTATTGGATAAGTCATAAATTTGTATTCGGAATGGCAACAAGGATTGGTTGCGGGAAAATATCGTCTCAGCCATTTTGTTCATTTAAAAAATTGAATTCCCAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01839	2534	25786	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01490	AMPD	EC:3.5.4.6	Purine metabolism	map00230

Gene Ontology

biological_process

GO:0009168 purine ribonucleoside monophosphate biosynthetic process

GO:0032264 IMP salvage

molecular_function GO:0003876 AMP deaminase activity GO:0019239 deaminase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001839s00033720.1	PF00962.17	A_deaminase	298	704	1.70E-117

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.652
SRR1783600	control	18.861
SRR1783602	moderate drought stress	20.775
SRR1811619	moderate drought stress	20.940

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.633
DRR006520	Root Summer glycyrrhizin high producing strain	23.517
DRR006521	Root Winter glycyrrhizin high producing strain	27.652
DRR006522	Root Winter glycyrrhizin high producing strain	26.929
DRR006523	Root Summer glycyrrhizin low producing strain	20.760
DRR006524	Root Summer glycyrrhizin low producing strain	20.893
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.978
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.085

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	42.667
SRR2868004	Drought Stress(Tissue:root)	63.229
SRR2967015	Control (Tissue:root)	77.076

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	22.924
SRR9715740	Leave	20.300
SRR9715741	Leave	35.592
SRR9715739	Root	3.124
SRR9715742	Root	31.890
SRR9715743	Root	26.235

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.203
SRR8749028	MeJA induced 9h	22.243
SRR8749029	MeJA induced 9h	20.000
SRR8749030	Uninduced	8.674
SRR8749031	Uninduced	5.792
SRR8749032	Uninduced	8.977

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	37.408
SRR8400027	Control-Root	34.970