Gene detail information of Glyur001841s00029497.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12740.1 | 7.00E-126 | HhH-GPD base excision DNA repair family protein |
| NR | XP_004510727.1 | 0 | PREDICTED: A/G-specific adenine DNA glycosylase-like isoform X3 [Cicer arietinum] |
| COG | YP_075556.1 | 4.00E-69 | A/G-specific adenine glycosylase [Symbiobacterium thermophilum IAM 14863] |
| Swissprot | tr|F4JRF4|MUTYH_ARATH | 2.00E-159 | A/G-specific adenine DNA glycosylase |
| trEMBL | tr|K7KZX6|K7KZX6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G06560.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01841 | 13315 | 17006 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03575 | mutY | EC:3.2.2.- | Base excision repair | map03410 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001841s00029497.1 | PF00730.20 | HhH-GPD | 101 | 223 | 4.90E-20 |
| Glyur001841s00029497.1 | PF14815.1 | NUDIX_4 | 314 | 438 | 7.90E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.109 |
| SRR1783600 | control | 1.092 |
| SRR1783602 | moderate drought stress | 0.786 |
| SRR1811619 | moderate drought stress | 0.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.652 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.821 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.403 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.385 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.542 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.544 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.009 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.374 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.396 |
| SRR2967015 | Control (Tissue:root) | 2.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.112 |
| SRR9715740 | Leave | 1.092 |
| SRR9715741 | Leave | 1.243 |
| SRR9715739 | Root | 0.542 |
| SRR9715742 | Root | 0.554 |
| SRR9715743 | Root | 0.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.871 |
| SRR8749028 | MeJA induced 9h | 0.269 |
| SRR8749029 | MeJA induced 9h | 0.499 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.731 |
| SRR8400027 | Control-Root | 2.293 |