Gene detail information of Glyur001841s00029504.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20340.1 | 2.00E-74 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
| NR | XP_003529905.1 | 6.10E-136 | PREDICTED: tyrosine/DOPA decarboxylase 1-like [Glycine max] |
| COG | YP_005443031.1 | 6.00E-55 | putative aromatic amino acid decarboxylase [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| Swissprot | tr|P54769|TYDC2_PAPSO | 5.00E-119 | Tyrosine decarboxylase |
| trEMBL | tr|I1KHY8|I1KHY8_SOYBN | 2.00E-136 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G06500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01841 | 38812 | 45438 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01592 | E4.1.1.25 | EC:4.1.1.25 | Tyrosine metabolism | map00350 |
| Isoquinoline alkaloid biosynthesis | map00950 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001841s00029504.1 | PF00282.14 | Pyridoxal_deC | 57 | 234 | 1.10E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.203 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.001 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.702 |
| SRR9715740 | Leave | 0.042 |
| SRR9715741 | Leave | 0.533 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.023 |
| SRR8400027 | Control-Root | 0.021 |