Gene detail

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Gene detail information of Glyur001841s00029506.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20340.1	6.00E-160	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NR	KHN27251.1	0	Tyrosine/DOPA decarboxylase 2 [Glycine soja]
COG	YP_591235.1	5.00E-142	aromatic-L-amino-acid decarboxylase [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|P54771\|TYDC5_PAPSO	0	Tyrosine decarboxylase
trEMBL	tr\|I1KHY8\|I1KHY8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G06500.1}

Sequence

Transcript Sequence

>Glyur001841s00029506.1
ATGAATAATACATTGATCAATTCCAATTTCCCTCCTCAAAGTGATTCACCCAGCAGAATCATAAAGCCTCTTGACCCTCAAGAATTCAAGAGGCAAGGCTACATGATGATTGATTTCCTTGCTGATTACTATGAAAACATTGCCAACTATCCCATCTTAAGCAACATTGAACCTGGTTATCTTCAAAAAAGATTGCCAGCTTCTGCCCCATCTAACCCAGAACCCATTGAATCCATACTCAAAGATGTGCAACAACACATCATCCCTGGCATCACACATTGGCAGAGTCCTAACTACTATGCCTACTTCCCTTCAAGTGGTAGCATAGCAGGGTTTATGGGGGAGATGCTAAGCACTGGACTCAATGTGGTTGGATTCAATTGGGTGTCATCGCCAGCTGCAACTGAGCTTGAAACTATAGTCATGGATTGGCTTGGACAACTACTAGATCTCCCAAAAACCTTCCTTTTCTCAGGTAATAGTAACAATAATGGTGGTGGGGTGTTGCTTGGAACCACTTGTGAGGCCATTTTGTGCACACTAGTGGCTGCAAGAGACAAAATGCTTTCCCAAGTTGGGAGGGAAAACATTGGGAAACTTGTTGTGTATGGCTCTGATCAAACACATAGTGCACTTCAAAAGGCTGCTCAAATTGCTGGCATCCATCCAAACAATTTCAGAGCCATCAAGACCAAGAGGTCAAACTCATTTGCTTTGTCCCCTGAGTCATTGCTTTCTACCATTCTCTTGGATGTGGAAAATGGGTTGATTCCTTGTTTCCTATGTGCAACTATAGGAACCACTGCCATAGCAACCATTGATCCTATAGGGCCATTGTGTAATGTGGCAAAGGACTATGGCATTTGGGTCCATGTTGATGCTGCTTATGCAGGTGCATCTTGCATTTGCCCTGAGTTTAGACACTTGTTTGTTGGGGTTGAAGAGGCAAACTCGTTTAGCTTCAATGCTCATAAGTGGTTTTTGACCAATTTAGCATGTTGTTGCCTTTGGGTGAAAGATCACACTGCTCTCACCAAGTCCCTAACAACAAGTCCTGAGTTCTTGAGGAACAAAGCTACCGAGTCAAAGCAAGTGATTGATTACAAAGATTGGCAAATAACCTTGAGCAGGAAATTCAATGCCCTCAAGCTATGGCTTGTTCTTCGAAGCTATGGTGTTGATAATCTTAGGAACTTCTTGAGGAGTCATGTGCAAATGGCCAAAACCTTTGAAGGGCTAGTGAGGTTGGATAAGAGGTTTGAGATTGTTGTGCCACCAAGATTCTCTTTGGTTTGCTTTAGGATTTCACCATCAGTAGTAGTTGTTGCTAATGGGCACTCCAATGGGAATGGCATAGAAGGAGCTGAGTGTAATGGGAAACTGGTGAATGGTATTGAGAAATGGGTGAATGAAGTGAATGGTAAATTGCTGGATTTAATTAATGGTTCTGGCAAGGCTTACATGACTCATGGTGAGGTTGAAGGAGATTTTGTGATTAGATGTGCTATCGGTGCAACATTGACAGAGGAACACCACGTGGTTATGACATGGAAATTGGTACATGAATGTGCAAATTCTCTATTAGCTCCATTCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01841	53399	54994	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01592	E4.1.1.25	EC:4.1.1.25	Tyrosine metabolism	map00350
K01592	E4.1.1.25	EC:4.1.1.25	Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

biological_process

GO:0006520 cellular amino acid metabolic process

GO:0019752 carboxylic acid metabolic process

molecular_function GO:0003824 catalytic activity GO:0016831 carboxy-lyase activity GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001841s00029506.1	PF00282.14	Pyridoxal_deC	58	435	2.80E-143

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.023
SRR1783600	control	0.023
SRR1783602	moderate drought stress	0.060
SRR1811619	moderate drought stress	0.036

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.558
DRR006520	Root Summer glycyrrhizin high producing strain	0.477
DRR006521	Root Winter glycyrrhizin high producing strain	0.070
DRR006522	Root Winter glycyrrhizin high producing strain	0.068
DRR006523	Root Summer glycyrrhizin low producing strain	0.170
DRR006524	Root Summer glycyrrhizin low producing strain	0.139
DRR006525	Leaf Summer glycyrrhizin high producing strain	86.089
DRR006526	Leaf Summer glycyrrhizin high producing strain	84.631

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.163
SRR2868004	Drought Stress(Tissue:root)	0.414
SRR2967015	Control (Tissue:root)	0.565

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	35.376
SRR9715740	Leave	87.312
SRR9715741	Leave	15.970
SRR9715739	Root	0.062
SRR9715742	Root	0.635
SRR9715743	Root	0.908

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.042
SRR8749029	MeJA induced 9h	0.029
SRR8749030	Uninduced	0.079
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.697
SRR8400027	Control-Root	0.715