Gene detail information of Glyur001843s00031854.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20696.3 | 9.00E-28 | high mobility group B3 |
| NR | ACF74313.1 | 4.10E-72 | high mobility group protein 2 [Arachis hypogaea] |
| Swissprot | tr|P26585|HMGL_SOYBN | 2.00E-69 | HMG1/2-like protein |
| trEMBL | tr|B4UW93|B4UW93_ARAHY | 2.00E-72 | High mobility group protein 2 {ECO:0000313|EMBL:ACF74313.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01843 | 40272 | 42501 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HMG |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001843s00031854.1 | PF00505.14 | HMG_box | 45 | 114 | 9.00E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 300.356 |
| SRR1783600 | control | 301.127 |
| SRR1783602 | moderate drought stress | 307.556 |
| SRR1811619 | moderate drought stress | 305.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 618.728 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 612.314 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1423.206 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1386.857 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 446.367 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 445.894 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 357.935 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 355.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 707.524 |
| SRR2868004 | Drought Stress(Tissue:root) | 724.602 |
| SRR2967015 | Control (Tissue:root) | 694.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 354.845 |
| SRR9715740 | Leave | 393.414 |
| SRR9715741 | Leave | 372.873 |
| SRR9715739 | Root | 858.793 |
| SRR9715742 | Root | 533.342 |
| SRR9715743 | Root | 586.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1145.939 |
| SRR8749028 | MeJA induced 9h | 727.225 |
| SRR8749029 | MeJA induced 9h | 1048.653 |
| SRR8749030 | Uninduced | 327.915 |
| SRR8749031 | Uninduced | 352.071 |
| SRR8749032 | Uninduced | 358.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 793.947 |
| SRR8400027 | Control-Root | 769.736 |