Gene detail information of Glyur001845s00034617.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G19810.14.00E-112CCCH-type zinc finger family protein
NRXP_004513076.10PREDICTED: zinc finger CCCH domain-containing protein 20-like [Cicer arietinum]
Swissprottr|Q9M0G2|C3H49_ARATH3.00E-144Zinc finger CCCH domain-containing protein 49
trEMBLtr|A0A067KPP4|A0A067KPP4_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP33764.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold018452393125061-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001845s00034617.1PF00642.19zf-CCCH1331535.70E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control236.413
SRR1783600control236.622
SRR1783602moderate drought stress315.722
SRR1811619moderate drought stress311.887

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain222.869
DRR006520Root Summer glycyrrhizin high producing strain219.438
DRR006521Root Winter glycyrrhizin high producing strain228.517
DRR006522Root Winter glycyrrhizin high producing strain221.623
DRR006523Root Summer glycyrrhizin low producing strain117.073
DRR006524Root Summer glycyrrhizin low producing strain115.367
DRR006525Leaf Summer glycyrrhizin high producing strain27.111
DRR006526Leaf Summer glycyrrhizin high producing strain27.202

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)44.822
SRR2868004Drought Stress(Tissue:root)62.045
SRR2967015Control (Tissue:root)99.768

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.301
SRR9715740Leave29.912
SRR9715741Leave24.159
SRR9715739Root477.463
SRR9715742Root288.364
SRR9715743Root323.140

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h147.733
SRR8749028MeJA induced 9h227.678
SRR8749029MeJA induced 9h79.372
SRR8749030Uninduced5.805
SRR8749031Uninduced9.827
SRR8749032Uninduced12.881

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root193.100
SRR8400027Control-Root143.671

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved