Gene detail information of Glyur001849s00031475.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G42250.14.00E-49Zinc-binding alcohol dehydrogenase family protein
NRKHN46477.13.64E-147Alcohol dehydrogenase-like 2 [Glycine soja]
COGNP_967848.17.00E-65alcohol dehydrogenase / formaldehyde dehydrogenase [Bdellovibrio bacteriovorus HD100]
Swissprottr|Q9FH04|ADHL7_ARATH3.00E-65Alcohol dehydrogenase-like 7
trEMBLtr|I1LP48|I1LP48_SOYBN1.00E-147Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G01780.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0184954729435+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00121frmA, ADH5, adhC EC:1.1.1.284 1.1.1.1 Carbon metabolism map01200
Degradation of aromatic compoundsmap01220
Glycolysis / Gluconeogenesismap00010
Methane metabolismmap00680
Fatty acid degradationmap00071
Tyrosine metabolismmap00350
Retinol metabolismmap00830
Chloroalkane and chloroalkene degradationmap00625
Naphthalene degradationmap00626
Metabolism of xenobiotics by cytochrome P450map00980
Drug metabolism - cytochrome P450map00982
Chemical carcinogenesismap05204


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0008270  zinc ion binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001849s00031475.2PF08240.7ADH_N1622693.20E-14
Glyur001849s00031475.2PF00107.21ADH_zinc_N3113943.30E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.078
SRR1783600control4.780
SRR1783602moderate drought stress5.353
SRR1811619moderate drought stress5.070

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.458
DRR006520Root Summer glycyrrhizin high producing strain6.648
DRR006521Root Winter glycyrrhizin high producing strain5.958
DRR006522Root Winter glycyrrhizin high producing strain5.481
DRR006523Root Summer glycyrrhizin low producing strain1.197
DRR006524Root Summer glycyrrhizin low producing strain1.349
DRR006525Leaf Summer glycyrrhizin high producing strain3.424
DRR006526Leaf Summer glycyrrhizin high producing strain3.552

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.697
SRR2868004Drought Stress(Tissue:root)53.447
SRR2967015Control (Tissue:root)35.111

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave49.290
SRR9715740Leave16.031
SRR9715741Leave38.707
SRR9715739Root1.781
SRR9715742Root25.277
SRR9715743Root20.439

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h55.793
SRR8749028MeJA induced 9h235.363
SRR8749029MeJA induced 9h174.435
SRR8749030Uninduced339.935
SRR8749031Uninduced1132.306
SRR8749032Uninduced529.655

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.970
SRR8400027Control-Root29.835

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved