Gene detail information of Glyur001855s00032357.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21580.1 | 8.00E-167 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| NR | KEH40506.1 | 0 | zinc finger CCCH domain protein, putative [Medicago truncatula] |
| Swissprot | tr|Q3ED78|C3H7_ARATH | 4.00E-174 | Zinc finger CCCH domain-containing protein 7 |
| trEMBL | tr|A0A072VFY2|A0A072VFY2_MEDTR | 0 | Zinc finger CCCH domain protein, putative {ECO:0000313|EMBL:KEH40506.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01855 | 21932 | 32047 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.832 |
| SRR1783600 | control | 12.973 |
| SRR1783602 | moderate drought stress | 21.600 |
| SRR1811619 | moderate drought stress | 21.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.588 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.508 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.440 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.904 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.225 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.132 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.320 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.314 |
| SRR2868004 | Drought Stress(Tissue:root) | 33.866 |
| SRR2967015 | Control (Tissue:root) | 33.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.028 |
| SRR9715740 | Leave | 10.987 |
| SRR9715741 | Leave | 15.585 |
| SRR9715739 | Root | 1.286 |
| SRR9715742 | Root | 10.284 |
| SRR9715743 | Root | 8.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.191 |
| SRR8749028 | MeJA induced 9h | 20.919 |
| SRR8749029 | MeJA induced 9h | 13.441 |
| SRR8749030 | Uninduced | 25.134 |
| SRR8749031 | Uninduced | 33.858 |
| SRR8749032 | Uninduced | 22.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.849 |
| SRR8400027 | Control-Root | 21.724 |