Gene detail information of Glyur001860s00042748.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29380.1 | 1.00E-28 | Carbohydrate-binding X8 domain superfamily protein |
| NR | KHN41343.1 | 3.55E-118 | Glucan endo-1,3-beta-glucosidase 7 [Glycine soja] |
| Swissprot | tr|Q9FJU9|E1313_ARATH | 3.00E-23 | Glucan endo-1,3-beta-glucosidase 13 (Precursor) |
| trEMBL | tr|K7LCN6|K7LCN6_SOYBN | 7.00E-114 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G11676.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01860 | 5690 | 9763 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001860s00042748.1 | PF07983.8 | X8 | 148 | 218 | 8.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.798 |
| SRR1783600 | control | 3.690 |
| SRR1783602 | moderate drought stress | 3.124 |
| SRR1811619 | moderate drought stress | 3.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.097 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.530 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.393 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.319 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.379 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.392 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.774 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.128 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.081 |
| SRR2967015 | Control (Tissue:root) | 5.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.396 |
| SRR9715740 | Leave | 0.186 |
| SRR9715741 | Leave | 0.635 |
| SRR9715739 | Root | 0.467 |
| SRR9715742 | Root | 4.204 |
| SRR9715743 | Root | 2.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.332 |
| SRR8749028 | MeJA induced 9h | 0.167 |
| SRR8749029 | MeJA induced 9h | 0.283 |
| SRR8749030 | Uninduced | 0.167 |
| SRR8749031 | Uninduced | 0.202 |
| SRR8749032 | Uninduced | 0.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.032 |
| SRR8400027 | Control-Root | 2.502 |