Gene detail information of Glyur001861s00038799.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G03790.20ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein
NRXP_006604250.10PREDICTED: uncharacterized protein LOC100800604 isoform X1 [Glycine max]
COGYP_003589725.14.00E-30S-layer protein [Kyrpidia tusciae DSM 2912]
Swissprottr|Q9FN03|UVR8_ARATH2.00E-31Ultraviolet-B receptor UVR8
trEMBLtr|K7MXV6|K7MXV6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G29100.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold018614056948917-


Gene family

Gene familysubfamily
Ubiquitin Family3-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001861s00038799.1PF12796.2Ank_2441261.60E-15
Glyur001861s00038799.1PF00415.13RCC11552026.80E-09
Glyur001861s00038799.1PF00415.13RCC12062592.50E-09
Glyur001861s00038799.1PF00415.13RCC12643114.30E-12
Glyur001861s00038799.1PF00415.13RCC13153641.20E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.186
SRR1783600control6.291
SRR1783602moderate drought stress8.936
SRR1811619moderate drought stress8.847

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.855
DRR006520Root Summer glycyrrhizin high producing strain10.771
DRR006521Root Winter glycyrrhizin high producing strain17.722
DRR006522Root Winter glycyrrhizin high producing strain16.875
DRR006523Root Summer glycyrrhizin low producing strain8.836
DRR006524Root Summer glycyrrhizin low producing strain8.770
DRR006525Leaf Summer glycyrrhizin high producing strain8.586
DRR006526Leaf Summer glycyrrhizin high producing strain8.487

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.714
SRR2868004Drought Stress(Tissue:root)14.209
SRR2967015Control (Tissue:root)14.049

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.425
SRR9715740Leave8.341
SRR9715741Leave15.588
SRR9715739Root1.611
SRR9715742Root14.391
SRR9715743Root12.222

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.949
SRR8749028MeJA induced 9h6.302
SRR8749029MeJA induced 9h2.220
SRR8749030Uninduced3.032
SRR8749031Uninduced1.497
SRR8749032Uninduced1.212

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.931
SRR8400027Control-Root16.929

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved