Gene detail information of Glyur001864s00033366.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38270.1 | 0 | galacturonosyltransferase 3 |
| NR | KHN27481.1 | 0 | Putative galacturonosyltransferase 3 [Glycine soja] |
| COG | YP_007713204.1 | 5.00E-06 | hypothetical protein MMALV_05390 [Candidatus Methanomethylophilus alvus Mx1201] |
| Swissprot | tr|Q0WQD2|GAUT3_ARATH | 0 | Probable galacturonosyltransferase 3 |
| trEMBL | tr|K7KNQ7|K7KNQ7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G09200.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01864 | 18624 | 22198 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13648 | GAUT | EC:2.4.1.43 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001864s00033366.1 | PF01501.15 | Glyco_transf_8 | 342 | 649 | 3.60E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.714 |
| SRR1783600 | control | 31.768 |
| SRR1783602 | moderate drought stress | 32.745 |
| SRR1811619 | moderate drought stress | 32.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.595 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.233 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 45.403 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 44.325 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.146 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.303 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.098 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 34.296 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.793 |
| SRR2967015 | Control (Tissue:root) | 30.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.295 |
| SRR9715740 | Leave | 16.361 |
| SRR9715741 | Leave | 15.285 |
| SRR9715739 | Root | 1.622 |
| SRR9715742 | Root | 9.402 |
| SRR9715743 | Root | 7.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.000 |
| SRR8749028 | MeJA induced 9h | 28.957 |
| SRR8749029 | MeJA induced 9h | 19.831 |
| SRR8749030 | Uninduced | 24.354 |
| SRR8749031 | Uninduced | 23.371 |
| SRR8749032 | Uninduced | 20.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 36.139 |
| SRR8400027 | Control-Root | 33.625 |