Gene detail information of Glyur001868s00036728.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G07420.11.00E-109sterol 4-alpha-methyl-oxidase 2-1
NRNP_001241155.19.86E-163uncharacterized protein LOC100790183 [Glycine max]
COGYP_004449996.12.00E-08fatty acid hydroxylase [Haliscomenobacter hydrossis DSM 1100]
Swissprottr|Q8VWZ8|SMO22_ARATH8.00E-138Methylsterol monooxygenase 2-2
trEMBLtr|C6TM45|C6TM45_SOYBN4.00E-163Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G03540.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold018683243935937+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14424SMO2 EC:1.14.13.72 Steroid biosynthesis map00100


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005506  iron ion binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001868s00036728.1PF04116.8FA_hydroxylase1132086.80E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.459
SRR1783600control18.596
SRR1783602moderate drought stress8.635
SRR1811619moderate drought stress8.651

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.293
DRR006520Root Summer glycyrrhizin high producing strain16.835
DRR006521Root Winter glycyrrhizin high producing strain2.363
DRR006522Root Winter glycyrrhizin high producing strain2.273
DRR006523Root Summer glycyrrhizin low producing strain7.885
DRR006524Root Summer glycyrrhizin low producing strain8.140
DRR006525Leaf Summer glycyrrhizin high producing strain7.740
DRR006526Leaf Summer glycyrrhizin high producing strain7.556

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.485
SRR2868004Drought Stress(Tissue:root)17.577
SRR2967015Control (Tissue:root)14.339

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.907
SRR9715740Leave4.038
SRR9715741Leave2.549
SRR9715739Root2.985
SRR9715742Root3.828
SRR9715743Root3.846

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.859
SRR8749028MeJA induced 9h3.050
SRR8749029MeJA induced 9h4.424
SRR8749030Uninduced0.910
SRR8749031Uninduced0.300
SRR8749032Uninduced0.048

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.085
SRR8400027Control-Root26.317

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved