Gene detail information of Glyur001876s00033002.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20696.2 | 8.00E-30 | high mobility group B3 |
| NR | KHN38836.1 | 2.50E-69 | HMG1/2-like protein [Glycine soja] |
| Swissprot | tr|P40619|HMGL_IPONI | 2.00E-45 | HMG1/2-like protein |
| trEMBL | tr|I1MMW6|I1MMW6_SOYBN | 2.00E-72 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G22060.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01876 | 16137 | 18167 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HMG |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001876s00033002.1 | PF00505.14 | HMG_box | 37 | 106 | 3.30E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.684 |
| SRR1783600 | control | 20.888 |
| SRR1783602 | moderate drought stress | 18.546 |
| SRR1811619 | moderate drought stress | 18.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 52.570 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 50.585 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 76.572 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 74.431 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 169.487 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 170.001 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.951 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 72.822 |
| SRR2868004 | Drought Stress(Tissue:root) | 56.879 |
| SRR2967015 | Control (Tissue:root) | 73.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 111.661 |
| SRR9715740 | Leave | 61.836 |
| SRR9715741 | Leave | 124.725 |
| SRR9715739 | Root | 46.352 |
| SRR9715742 | Root | 89.950 |
| SRR9715743 | Root | 75.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 283.724 |
| SRR8749028 | MeJA induced 9h | 332.430 |
| SRR8749029 | MeJA induced 9h | 360.556 |
| SRR8749030 | Uninduced | 231.672 |
| SRR8749031 | Uninduced | 118.976 |
| SRR8749032 | Uninduced | 145.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 59.106 |
| SRR8400027 | Control-Root | 60.366 |