Gene detail information of Glyur001880s00033693.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G37790.1 | 6.00E-140 | Protein kinase superfamily protein |
| NR | XP_007163395.1 | 0 | hypothetical protein PHAVU_001G231200g [Phaseolus vulgaris] |
| COG | YP_003268064.1 | 6.00E-26 | serine/threonine protein kinase [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q9CAL8|PEK13_ARATH | 6.00E-57 | Proline-rich receptor-like protein kinase PERK13 |
| trEMBL | tr|V7CZ40|V7CZ40_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW35389.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01880 | 21999 | 25166 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.10.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001880s00033693.1 | PF00069.20 | Pkinase | 152 | 408 | 1.80E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.325 |
| SRR1783600 | control | 0.329 |
| SRR1783602 | moderate drought stress | 0.308 |
| SRR1811619 | moderate drought stress | 0.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.598 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.670 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.519 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.672 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.215 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.304 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.818 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.963 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.910 |
| SRR2967015 | Control (Tissue:root) | 6.990 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.462 |
| SRR9715740 | Leave | 4.666 |
| SRR9715741 | Leave | 3.434 |
| SRR9715739 | Root | 1.265 |
| SRR9715742 | Root | 0.976 |
| SRR9715743 | Root | 0.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.095 |
| SRR8749028 | MeJA induced 9h | 0.176 |
| SRR8749029 | MeJA induced 9h | 0.054 |
| SRR8749030 | Uninduced | 0.073 |
| SRR8749031 | Uninduced | 0.489 |
| SRR8749032 | Uninduced | 0.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.522 |
| SRR8400027 | Control-Root | 3.279 |