Gene detail information of Glyur001881s00033138.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31810.1 | 4.00E-09 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein |
| NR | XP_004498810.1 | 3.58E-30 | PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|Q8RXN4|HIBC5_ARATH | 1.00E-11 | 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial (Precursor) |
| trEMBL | tr|G7I876|G7I876_MEDTR | 1.00E-26 | Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AES59108.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01881 | 113 | 1008 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05605 | HIBCH | EC:3.1.2.4 | Carbon metabolism | map01200 |
| Propanoate metabolism | map00640 | |||
| Valine, leucine and isoleucine degradation | map00280 | |||
| beta-Alanine metabolism | map00410 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.856 |
| SRR1783600 | control | 1.822 |
| SRR1783602 | moderate drought stress | 0.046 |
| SRR1811619 | moderate drought stress | 0.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.480 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.406 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.306 |
| SRR2967015 | Control (Tissue:root) | 0.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.619 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 2.895 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 3.163 |
| SRR9715743 | Root | 2.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.485 |
| SRR8749028 | MeJA induced 9h | 1.000 |
| SRR8749029 | MeJA induced 9h | 0.226 |
| SRR8749030 | Uninduced | 0.436 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.351 |
| SRR8400027 | Control-Root | 0.055 |