Gene detail information of Glyur001881s00033142.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G22400.13.00E-127PLAT/LH2 domain-containing lipoxygenase family protein
NRKEH26311.10lipoxygenase [Medicago truncatula]
Swissprottr|Q41238|LOX16_SOLTU8.00E-152Linoleate 9S-lipoxygenase 6 (Fragment)
trEMBLtr|A0A072UA69|A0A072UA69_MEDTR0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold018811424116466-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00454LOX2S EC:1.13.11.12 Linoleic acid metabolism map00591
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001881s00033142.1PF00305.14Lipoxygenase14252.50E-153


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.217
SRR1783600control0.124
SRR1783602moderate drought stress0.185
SRR1811619moderate drought stress0.253

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.477
DRR006520Root Summer glycyrrhizin high producing strain0.827
DRR006521Root Winter glycyrrhizin high producing strain0.082
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.494
DRR006524Root Summer glycyrrhizin low producing strain0.328
DRR006525Leaf Summer glycyrrhizin high producing strain0.126
DRR006526Leaf Summer glycyrrhizin high producing strain0.069

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.412
SRR2868004Drought Stress(Tissue:root)0.777
SRR2967015Control (Tissue:root)0.542

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.075
SRR9715740Leave0.047
SRR9715741Leave0.072
SRR9715739Root0.000
SRR9715742Root0.277
SRR9715743Root0.023

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.186
SRR8749028MeJA induced 9h0.382
SRR8749029MeJA induced 9h0.073
SRR8749030Uninduced0.083
SRR8749031Uninduced0.000
SRR8749032Uninduced0.150

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.352
SRR8400027Control-Root0.371

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved