Gene detail information of Glyur001881s00033146.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22400.1 | 5.00E-38 | PLAT/LH2 domain-containing lipoxygenase family protein |
| NR | XP_006576654.1 | 7.09E-88 | PREDICTED: linoleate 9S-lipoxygenase 5, chloroplastic-like isoform X1 [Glycine max] |
| Swissprot | tr|P09918|LOX3_PEA | 3.00E-46 | Seed linoleate 9S-lipoxygenase-3 |
| trEMBL | tr|I1JMA5|I1JMA5_SOYBN | 3.00E-88 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01881 | 29732 | 30759 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00454 | LOX2S | EC:1.13.11.12 | Linoleic acid metabolism | map00591 |
| alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001881s00033146.1 | PF01477.18 | PLAT | 28 | 110 | 2.60E-10 |
| Glyur001881s00033146.1 | PF00305.14 | Lipoxygenase | 114 | 184 | 1.60E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.026 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.032 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.096 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.054 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.106 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.023 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.075 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.108 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.135 |
| SRR8400027 | Control-Root | 0.211 |