Gene detail information of Glyur001885s00035910.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02670.1 | 4.00E-95 | indeterminate(ID)-domain 12 |
| NR | XP_003553472.1 | 0 | PREDICTED: zinc finger protein MAGPIE [Glycine max] |
| Swissprot | tr|O22759|IDD12_ARATH | 2.00E-119 | Protein indeterminate-domain 12 {ECO:0000303|PubMed:16784536} |
| trEMBL | tr|K7MYM4|K7MYM4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G34220.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01885 | 11315 | 15997 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.079 |
| SRR1783600 | control | 5.981 |
| SRR1783602 | moderate drought stress | 10.302 |
| SRR1811619 | moderate drought stress | 10.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.698 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.911 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.216 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.136 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.639 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.654 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.833 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.341 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.911 |
| SRR2967015 | Control (Tissue:root) | 0.778 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.534 |
| SRR9715740 | Leave | 4.968 |
| SRR9715741 | Leave | 4.392 |
| SRR9715739 | Root | 4.246 |
| SRR9715742 | Root | 5.851 |
| SRR9715743 | Root | 4.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.159 |
| SRR8749028 | MeJA induced 9h | 0.681 |
| SRR8749029 | MeJA induced 9h | 0.262 |
| SRR8749030 | Uninduced | 0.414 |
| SRR8749031 | Uninduced | 0.172 |
| SRR8749032 | Uninduced | 0.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.581 |
| SRR8400027 | Control-Root | 5.061 |