Gene detail information of Glyur001885s00035912.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22830.1 | 5.00E-91 | heat shock transcription factor A6B |
| NR | KHN02551.1 | 0 | Heat stress transcription factor A-6b [Glycine soja] |
| Swissprot | tr|Q9LUH8|HFA6B_ARATH | 9.00E-123 | Heat stress transcription factor A-6b |
| trEMBL | tr|I1N9K5|I1N9K5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G34210.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01885 | 24177 | 27262 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001885s00035912.1 | PF00447.12 | HSF_DNA-bind | 48 | 139 | 4.30E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.295 |
| SRR1783600 | control | 6.400 |
| SRR1783602 | moderate drought stress | 2.575 |
| SRR1811619 | moderate drought stress | 2.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.406 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.779 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.247 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.138 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.101 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.978 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.749 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.829 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.903 |
| SRR2967015 | Control (Tissue:root) | 11.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.207 |
| SRR9715740 | Leave | 5.151 |
| SRR9715741 | Leave | 3.690 |
| SRR9715739 | Root | 0.980 |
| SRR9715742 | Root | 8.899 |
| SRR9715743 | Root | 7.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.893 |
| SRR8749028 | MeJA induced 9h | 5.292 |
| SRR8749029 | MeJA induced 9h | 3.718 |
| SRR8749030 | Uninduced | 0.183 |
| SRR8749031 | Uninduced | 1.208 |
| SRR8749032 | Uninduced | 0.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.081 |
| SRR8400027 | Control-Root | 14.829 |