Gene detail information of Glyur001887s00036743.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06710.1 | 3.00E-43 | homeobox from Arabidopsis thaliana |
| NR | XP_003595805.1 | 7.17E-110 | Homeobox-leucine zipper protein HAT14 [Medicago truncatula] |
| Swissprot | tr|P46665|HAT14_ARATH | 7.00E-81 | Homeobox-leucine zipper protein HAT14 |
| trEMBL | tr|G7IJ30|G7IJ30_MEDTR | 3.00E-110 | Homeobox associated leucine zipper protein {ECO:0000313|EMBL:AES66056.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01887 | 14628 | 17089 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001887s00036743.1 | PF00046.24 | Homeobox | 193 | 238 | 2.10E-08 |
| Glyur001887s00036743.1 | PF02183.13 | HALZ | 242 | 284 | 1.70E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.130 |
| SRR1783600 | control | 3.136 |
| SRR1783602 | moderate drought stress | 7.518 |
| SRR1811619 | moderate drought stress | 7.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.823 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.029 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.927 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.728 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.061 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.833 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.014 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.217 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.437 |
| SRR2967015 | Control (Tissue:root) | 49.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.090 |
| SRR9715740 | Leave | 10.416 |
| SRR9715741 | Leave | 15.489 |
| SRR9715739 | Root | 2.380 |
| SRR9715742 | Root | 4.527 |
| SRR9715743 | Root | 3.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.508 |
| SRR8749028 | MeJA induced 9h | 57.887 |
| SRR8749029 | MeJA induced 9h | 39.456 |
| SRR8749030 | Uninduced | 7.988 |
| SRR8749031 | Uninduced | 8.947 |
| SRR8749032 | Uninduced | 7.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.650 |
| SRR8400027 | Control-Root | 12.106 |