Gene detail information of Glyur001891s00034425.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G07270.15.00E-162GTP cyclohydrolase I
NRXP_007140677.10hypothetical protein PHAVU_008G132600g [Phaseolus vulgaris]
COGYP_007056784.11.00E-37GTP cyclohydrolase I [Rivularia sp. PCC 7116]
Swissprottr|Q8VYU3|GCH1_SOLLC0GTP cyclohydrolase 1 {ECO:0000305}
trEMBLtr|V7B893|V7B893_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW12671.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold018912555930155-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01495GCH1, folE EC:3.5.4.16 Folate biosynthesis map00790


Gene Ontology

biological_process

GO:0046654  tetrahydrofolate biosynthetic process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003934  GTP cyclohydrolase I activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001891s00034425.1PF01227.17GTP_cyclohydroI361885.10E-35
Glyur001891s00034425.1PF01227.17GTP_cyclohydroI2764522.10E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.217
SRR1783600control1.271
SRR1783602moderate drought stress0.554
SRR1811619moderate drought stress0.525

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.462
DRR006520Root Summer glycyrrhizin high producing strain2.736
DRR006521Root Winter glycyrrhizin high producing strain0.304
DRR006522Root Winter glycyrrhizin high producing strain0.249
DRR006523Root Summer glycyrrhizin low producing strain5.877
DRR006524Root Summer glycyrrhizin low producing strain5.064
DRR006525Leaf Summer glycyrrhizin high producing strain4.156
DRR006526Leaf Summer glycyrrhizin high producing strain4.719

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.494
SRR2868004Drought Stress(Tissue:root)8.895
SRR2967015Control (Tissue:root)7.077

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.880
SRR9715740Leave7.483
SRR9715741Leave4.696
SRR9715739Root2.567
SRR9715742Root1.101
SRR9715743Root1.300

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.743
SRR8749028MeJA induced 9h2.735
SRR8749029MeJA induced 9h2.588
SRR8749030Uninduced2.391
SRR8749031Uninduced0.802
SRR8749032Uninduced1.237

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.418
SRR8400027Control-Root10.089

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved