Gene detail information of Glyur001894s00031736.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67580.2 | 4.00E-59 | Homeodomain-like/winged-helix DNA-binding family protein |
| NR | XP_003524694.1 | 3.24E-157 | PREDICTED: telomere repeat-binding factor 2-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FJW5|TRB2_ARATH | 3.00E-77 | Telomere repeat-binding factor 2 |
| trEMBL | tr|K7KPH5|K7KPH5_SOYBN | 1.00E-157 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G22500.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01894 | 6295 | 11331 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001894s00031736.1 | PF00249.26 | Myb_DNA-binding | 5 | 55 | 1.70E-08 |
| Glyur001894s00031736.1 | PF00538.14 | Linker_histone | 127 | 180 | 4.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.765 |
| SRR1783600 | control | 20.742 |
| SRR1783602 | moderate drought stress | 18.668 |
| SRR1811619 | moderate drought stress | 18.534 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.062 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.128 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.140 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.096 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.990 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.923 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.548 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.030 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.515 |
| SRR2967015 | Control (Tissue:root) | 18.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.674 |
| SRR9715740 | Leave | 11.521 |
| SRR9715741 | Leave | 11.245 |
| SRR9715739 | Root | 5.168 |
| SRR9715742 | Root | 10.819 |
| SRR9715743 | Root | 8.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.019 |
| SRR8749028 | MeJA induced 9h | 8.336 |
| SRR8749029 | MeJA induced 9h | 7.939 |
| SRR8749030 | Uninduced | 7.689 |
| SRR8749031 | Uninduced | 6.625 |
| SRR8749032 | Uninduced | 5.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.155 |
| SRR8400027 | Control-Root | 27.221 |