Gene detail information of Glyur001895s00033538.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G06840.18.00E-135Leucine-rich repeat protein kinase family protein
NRXP_003600556.10hypothetical protein MTR_3g062590 [Medicago truncatula]
COGNP_613538.16.00E-2750S ribosomal protein L10 [Methanopyrus kandleri AV19]
Swissprottr|C0LGD7|Y1684_ARATH3.00E-168Probable LRR receptor-like serine/threonine-protein kinase At1g06840 (Precursor)
trEMBLtr|G7IV56|G7IV56_MEDTR0LRR receptor-like kinase {ECO:0000313|EMBL:AES70807.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01895925817567+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.3.2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006412  translation

GO:0006468  protein phosphorylation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001895s00033538.1PF00069.20Pkinase1902538.30E-07
Glyur001895s00033538.1PF00069.20Pkinase2553686.10E-24
Glyur001895s00033538.1PF00252.13Ribosomal_L165216531.20E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.297
SRR1783600control5.412
SRR1783602moderate drought stress5.769
SRR1811619moderate drought stress5.779

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.806
DRR006520Root Summer glycyrrhizin high producing strain2.734
DRR006521Root Winter glycyrrhizin high producing strain17.825
DRR006522Root Winter glycyrrhizin high producing strain17.384
DRR006523Root Summer glycyrrhizin low producing strain4.356
DRR006524Root Summer glycyrrhizin low producing strain3.764
DRR006525Leaf Summer glycyrrhizin high producing strain12.662
DRR006526Leaf Summer glycyrrhizin high producing strain12.771

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)42.985
SRR2868004Drought Stress(Tissue:root)189.687
SRR2967015Control (Tissue:root)79.780

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave188.369
SRR9715740Leave18.296
SRR9715741Leave250.106
SRR9715739Root6.077
SRR9715742Root17.363
SRR9715743Root14.054

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h87.253
SRR8749028MeJA induced 9h241.095
SRR8749029MeJA induced 9h225.355
SRR8749030Uninduced558.130
SRR8749031Uninduced482.116
SRR8749032Uninduced652.443

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root45.575
SRR8400027Control-Root32.699

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved