Gene detail information of Glyur001896s00036065.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24090.11.00E-85chitinase A
NRKHN28254.10G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Glycine soja]
Swissprottr|P23472|CHLY_HEVBR8.00E-106Lysozyme (Precursor)
trEMBLtr|K7N178|K7N178_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G04645.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01896821912119+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001896s00036065.1PF00704.23Glyco_hydro_18342584.10E-20
Glyur001896s00036065.1PF08276.6PAN_23283861.20E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.106
SRR1783600control3.266
SRR1783602moderate drought stress0.952
SRR1811619moderate drought stress0.941

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.219
DRR006520Root Summer glycyrrhizin high producing strain2.491
DRR006521Root Winter glycyrrhizin high producing strain0.315
DRR006522Root Winter glycyrrhizin high producing strain0.213
DRR006523Root Summer glycyrrhizin low producing strain2.268
DRR006524Root Summer glycyrrhizin low producing strain1.957
DRR006525Leaf Summer glycyrrhizin high producing strain4.269
DRR006526Leaf Summer glycyrrhizin high producing strain4.518

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.586
SRR2868004Drought Stress(Tissue:root)9.751
SRR2967015Control (Tissue:root)7.687

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.131
SRR9715740Leave7.489
SRR9715741Leave24.864
SRR9715739Root1.143
SRR9715742Root11.997
SRR9715743Root11.425

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.360
SRR8749028MeJA induced 9h38.273
SRR8749029MeJA induced 9h14.947
SRR8749030Uninduced30.351
SRR8749031Uninduced18.947
SRR8749032Uninduced9.667

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.871
SRR8400027Control-Root19.643

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved