Gene detail information of Glyur001900s00037695.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07270.1 | 0 | XB3 ortholog 3 in Arabidopsis thaliana |
| NR | XP_003635934.1 | 0 | Ankyrin repeat-containing protein [Medicago truncatula] |
| COG | YP_001958455.1 | 9.00E-15 | hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q4FE45|XB33_ARATH | 0 | E3 ubiquitin-protein ligase XBAT33 |
| trEMBL | tr|G7ZV34|G7ZV34_MEDTR | 0 | E3 ubiquitin-protein ligase XBOS32 {ECO:0000313|EMBL:KEH17363.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01900 | 11288 | 17697 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001900s00037695.3 | PF13920.1 | zf-C3HC4_3 | 97 | 153 | 4.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.055 |
| SRR1783600 | control | 36.856 |
| SRR1783602 | moderate drought stress | 48.646 |
| SRR1811619 | moderate drought stress | 47.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.987 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 39.249 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 58.538 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 56.032 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 60.949 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 62.297 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.641 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 52.001 |
| SRR2868004 | Drought Stress(Tissue:root) | 55.177 |
| SRR2967015 | Control (Tissue:root) | 66.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.809 |
| SRR9715740 | Leave | 12.973 |
| SRR9715741 | Leave | 14.801 |
| SRR9715739 | Root | 22.134 |
| SRR9715742 | Root | 31.273 |
| SRR9715743 | Root | 28.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.801 |
| SRR8749028 | MeJA induced 9h | 75.620 |
| SRR8749029 | MeJA induced 9h | 94.185 |
| SRR8749030 | Uninduced | 31.729 |
| SRR8749031 | Uninduced | 158.349 |
| SRR8749032 | Uninduced | 142.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 37.329 |
| SRR8400027 | Control-Root | 41.689 |