Gene detail information of Glyur001905s00036191.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G23390.1 | 1.00E-57 | Kelch repeat-containing F-box family protein |
| NR | XP_004489820.1 | 0 | PREDICTED: F-box/kelch-repeat protein At1g23390-like [Cicer arietinum] |
| Swissprot | tr|Q9LDE3|FBK9_ARATH | 3.00E-83 | F-box/kelch-repeat protein At1g23390 |
| trEMBL | tr|V7CGW0|V7CGW0_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW29364.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01905 | 7596 | 8690 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001905s00036191.1 | PF00646.28 | F-box | 15 | 46 | 0.00045 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.622 |
| SRR1783600 | control | 10.520 |
| SRR1783602 | moderate drought stress | 11.783 |
| SRR1811619 | moderate drought stress | 11.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.422 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.804 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.767 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.506 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.485 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.267 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.923 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.146 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.762 |
| SRR2967015 | Control (Tissue:root) | 28.967 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.582 |
| SRR9715740 | Leave | 10.404 |
| SRR9715741 | Leave | 9.307 |
| SRR9715739 | Root | 31.440 |
| SRR9715742 | Root | 15.962 |
| SRR9715743 | Root | 19.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.741 |
| SRR8749028 | MeJA induced 9h | 20.880 |
| SRR8749029 | MeJA induced 9h | 28.551 |
| SRR8749030 | Uninduced | 3.223 |
| SRR8749031 | Uninduced | 1.125 |
| SRR8749032 | Uninduced | 5.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.012 |
| SRR8400027 | Control-Root | 21.131 |