Gene detail information of Glyur001907s00034850.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G04960.12.00E-154Plant invertase/pectin methylesterase inhibitor superfamily
NRXP_003526361.10PREDICTED: putative pectinesterase/pectinesterase inhibitor 24-like [Glycine max]
COGYP_006407803.11.00E-51pectin methylesterase [Belliella baltica DSM 15883]
Swissprottr|Q9FF78|PME46_ARATH0Pectinesterase 46
trEMBLtr|I1KFM7|I1KFM7_SOYBN0Pectinesterase {ECO:0000256|RuleBase:RU000589}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold019072599329913+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0004857  enzyme inhibitor activity

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001907s00034850.1PF04043.10PMEI662241.40E-30
Glyur001907s00034850.1PF01095.14Pectinesterase2724236.60E-68
Glyur001907s00034850.1PF01095.14Pectinesterase4245104.30E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.161
SRR1783600control0.163
SRR1783602moderate drought stress0.089
SRR1811619moderate drought stress0.032

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.562
DRR006520Root Summer glycyrrhizin high producing strain0.493
DRR006521Root Winter glycyrrhizin high producing strain0.243
DRR006522Root Winter glycyrrhizin high producing strain0.309
DRR006523Root Summer glycyrrhizin low producing strain0.835
DRR006524Root Summer glycyrrhizin low producing strain0.817
DRR006525Leaf Summer glycyrrhizin high producing strain0.153
DRR006526Leaf Summer glycyrrhizin high producing strain0.221

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.135
SRR2868004Drought Stress(Tissue:root)4.615
SRR2967015Control (Tissue:root)4.026

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.026
SRR9715740Leave0.041
SRR9715741Leave0.000
SRR9715739Root0.000
SRR9715742Root0.294
SRR9715743Root0.114

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.161
SRR8749028MeJA induced 9h0.141
SRR8749029MeJA induced 9h0.313
SRR8749030Uninduced0.054
SRR8749031Uninduced0.290
SRR8749032Uninduced0.266

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.317
SRR8400027Control-Root0.398

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved