Gene detail information of Glyur001907s00034851.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G04970.16.00E-162Plant invertase/pectin methylesterase inhibitor superfamily
NRKHN26434.10Putative pectinesterase/pectinesterase inhibitor 47 [Glycine soja]
COGYP_006407803.11.00E-49pectin methylesterase [Belliella baltica DSM 15883]
Swissprottr|Q9FF77|PME47_ARATH0Pectinesterase 47 (Precursor)
trEMBLtr|I1KFM8|I1KFM8_SOYBN0Pectinesterase {ECO:0000256|RuleBase:RU000589}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold019073074236317-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01051E3.1.1.11 EC:3.1.1.11 Pentose and glucuronate interconversions map00040


Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0004857  enzyme inhibitor activity

GO:0030599  pectinesterase activity

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001907s00034851.1PF04043.10PMEI311251.80E-10
Glyur001907s00034851.1PF01095.14Pectinesterase1904871.40E-137


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.520
SRR1783600control1.435
SRR1783602moderate drought stress3.393
SRR1811619moderate drought stress3.361

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.016
DRR006520Root Summer glycyrrhizin high producing strain4.948
DRR006521Root Winter glycyrrhizin high producing strain0.063
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain12.161
DRR006524Root Summer glycyrrhizin low producing strain12.128
DRR006525Leaf Summer glycyrrhizin high producing strain10.892
DRR006526Leaf Summer glycyrrhizin high producing strain10.970

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.484
SRR2868004Drought Stress(Tissue:root)7.321
SRR2967015Control (Tissue:root)7.324

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave41.567
SRR9715740Leave6.673
SRR9715741Leave11.399
SRR9715739Root1.311
SRR9715742Root36.154
SRR9715743Root29.035

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h146.234
SRR8749028MeJA induced 9h73.486
SRR8749029MeJA induced 9h79.422
SRR8749030Uninduced6.121
SRR8749031Uninduced1.477
SRR8749032Uninduced6.429

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.342
SRR8400027Control-Root7.052

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved