Gene detail information of Glyur001907s00034854.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G22170.20far-red elongated hypocotyls 3
NRXP_004499738.10PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cicer arietinum]
Swissprottr|Q9LIE5|FHY3_ARATH0Protein FAR-RED ELONGATED HYPOCOTYL 3
trEMBLtr|V7BRX5|V7BRX5_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW20752.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold019074727950851+


Gene family

Gene familysubfamily
Transcription Factors FamilyFAR1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001907s00034854.1PF03101.10FAR1891912.00E-24
Glyur001907s00034854.1PF10551.4MULE2443317.70E-22
Glyur001907s00034854.1PF04434.12SWIM4634909.00E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.459
SRR1783600control13.493
SRR1783602moderate drought stress15.921
SRR1811619moderate drought stress15.821

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.314
DRR006520Root Summer glycyrrhizin high producing strain24.437
DRR006521Root Winter glycyrrhizin high producing strain28.565
DRR006522Root Winter glycyrrhizin high producing strain27.801
DRR006523Root Summer glycyrrhizin low producing strain28.323
DRR006524Root Summer glycyrrhizin low producing strain28.618
DRR006525Leaf Summer glycyrrhizin high producing strain14.806
DRR006526Leaf Summer glycyrrhizin high producing strain14.581

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.230
SRR2868004Drought Stress(Tissue:root)30.436
SRR2967015Control (Tissue:root)33.563

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.438
SRR9715740Leave16.044
SRR9715741Leave18.805
SRR9715739Root2.582
SRR9715742Root13.912
SRR9715743Root10.907

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h45.569
SRR8749028MeJA induced 9h52.995
SRR8749029MeJA induced 9h46.504
SRR8749030Uninduced26.085
SRR8749031Uninduced29.701
SRR8749032Uninduced31.790

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.116
SRR8400027Control-Root24.383

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved