Gene detail

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Gene detail information of Glyur001908s00030727.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G46440.2	1.00E-178	UDP-XYL synthase 5
NR	XP_004487020.1	0	PREDICTED: UDP-glucuronic acid decarboxylase 6-like isoform X1 [Cicer arietinum]
COG	YP_007108422.1	2.00E-158	NAD-dependent epimerase/dehydratase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q9SN95\|UXS5_ARATH	0	UDP-glucuronic acid decarboxylase 5
trEMBL	tr\|T2DN95\|T2DN95_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04079.1}

Sequence

Transcript Sequence

>Glyur001908s00030727.2
ATACAAGTATCCAAACCGAAGCACAAAATCTCTGTGCTTTGCGTCGTTAACCTTGACACCACCTCAGATCAGATCAATTCCCCTTTTATTAAACCCTTTTATACCGTCTGCACTCTGCACCCCACCCAATAGGAATTGAATTTCAGAGGTTTTGACAATGGCAACTAATTCTTCTAATGGGGAGCAACAAACAACATCAAAACAACCTCCCCTGCCATCTCCTTTGCGCTTTTCCAAATTCTTTCAGTCCAATATGAGAATTTTGGTCACNGGAGGAGCTGGATTTATTGGTTCTCACCTAGTTGACAGATTGATGGAAAACGAAAAAAACGAGGTAATTGTTGTTGATAACTTCTTCACTGGATCTAAAGACAACCTTAGAAAATGGATTGGTCATCCGAGATTTGAGCTAATTCGTCACGATGTGACAGAGCAACTGTTAGTTGAGGTCGATCANATCTACCATCTTGCATGCCCTGCTTCTCCGATTTTCTACAAATACAATCCTGTAAAGACAATAAAGACAAATGTAATTGGAACACTGAACATGCTTGGGCTTGCAAAGCGAGTTGGAGCAAGGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCCACAACCAGAAAGCTATTGGGGAAATGTCAATCCTATTGGAGTCCGGAGTTGCTATGATGAGGGCAAGCGTGTAGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGAAATACGAATTGCCAGAATCTTTAACACATATGGACCACGCATGAATATTGANGATGGGCGTGTCGTCAGCAACTTTATTGCTCAAGCAATTCGTGGTGAACCCCTAACGGTCCAACTTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGACATGGTTGATGCTCTTATTCGTCTCATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGGTGAGTTTACTATGACTGAACTTGCTGAGAATGTGAAGGAGCTTATTAATCCAGCTGTGGAGATAAAGATGGTGGAGAACACTCCCGACGATCCTCGGCAAAGAAAACCAGACATAACAAAAGCAAAGGAATTGCTTGGATGGGAGCCAAAGGTCAAGTTGCGGGATGGCCTTCCTCTTATGGAAGAGGATTTCCGTTTGAGGCTTGGNGTCCTGACAATGGCAACGAATTCTTCTAATGGACATGATCACCAAGCAACAAAGCAACCTCCCCTGCCATCTCCCTTGCGTTTTTCCAAATTCTTTCAGTCCAACATGAGAATCTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCACCTAGTTGACAGACTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGATAACTACTTCACTGGATCCAAGGACAACCTCAAAAAATGGATTGATGTTACGGAGCCTTTGTTGATTGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAGCGAGATTTTGCTTACATCAACTTCAGAGGAGTTCGTAGTTGCTATGATGAGGGGAAACGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAGCATGGGCTTGAAATTCGCATTGCAAGAATCTTCAACACATATGGACCGCGCATGAATATTGATGATGGGCGCGTTGTTAGCAACTTCATTGCTCAAGCACTTCGTGGTGAACCCTTGACAGTCCAATCTCCAGGAACACAAACTCGGAGTTTCTGCTATGTCTCTGACCTGGTTGATGGCCTTATCCGTCTCATGGAAGGTCCCCACACTGGGCCAATCAACCTTGGAAACCCAGGTGAATTTACAATGACTGAACTTGCTGAGACAGTGAAAGAGCTTATTAATCCAAATGTGGAGATCAAGGATGTGGAAAACACTCCGGATGATCCGCGACAGAGAAAACCAGACATAACAAAAGCAAAGGAATTGTTGGGGTGGGAACCAAAGATCAAGTTAAGGGATGGTCTTCCTCTTATGGAAGAGGATTTCAGTCTCAGACTTGGAGTTAACAAAAACAGTTAACTTATTTTTCGCTCCTTAATTTGGTGTCATTGTCAAAGCAGATTTTTGAGTGGGATGTGTCTGTCTGGTTGTTTTCAAAATTTTCATTTCTTCATAGTGCTATATGATACTGAGGAAGTTGGGGTACCTGAAATTTGGCTTCTGGAAGTACCAATATCTTGTTCTTTGTTTACCATAAGACTACAGCATCAACATGTCCCTCCAAATTTTGCCGGTCGAATGAAGATTAAATTGAAATTTTTTTTTCCTGATTTCTGGTTATTTTTTCTACTTTCTTCTTTTTTTTTGGTCAATATTTTTTCTACTTTCTTTATTCAAGTGTCTTTGGGGTCTGAGTTCCTTCTGGGCACACTTACTCCCAAAAAAAAACTGATTTTACAATTGAGTCATGCCAAGGTCTCACCCACAAGTGAATGATGTGAAAGTCGACGGGGTGATTCACACTACATTTGAGTCGAATTTCATTTTGAATTGTATGATTATTTCATTGGAGAACATTTTTGTTTGTAATAAAAATCCTATTCAGAACTTTATTATTTTATGTGGAACTAATCTGGACTTCTGGAGTTAGTTTTATACGTGATAAAAAAAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01908	23700	39100	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08678	UXS1, uxs	EC:4.1.1.35	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001908s00030727.2	PF01370.16	Epimerase	35	269	5.10E-45
Glyur001908s00030727.2	PF01370.16	Epimerase	379	471	2.40E-11
Glyur001908s00030727.2	PF01370.16	Epimerase	482	578	6.40E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.927
SRR1783600	control	11.765
SRR1783602	moderate drought stress	9.093
SRR1811619	moderate drought stress	8.970

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.578
DRR006520	Root Summer glycyrrhizin high producing strain	37.787
DRR006521	Root Winter glycyrrhizin high producing strain	15.759
DRR006522	Root Winter glycyrrhizin high producing strain	15.663
DRR006523	Root Summer glycyrrhizin low producing strain	21.400
DRR006524	Root Summer glycyrrhizin low producing strain	21.710
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.862
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.002

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	47.283
SRR2868004	Drought Stress(Tissue:root)	29.011
SRR2967015	Control (Tissue:root)	28.510

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	20.413
SRR9715740	Leave	7.273
SRR9715741	Leave	10.492
SRR9715739	Root	6.751
SRR9715742	Root	15.973
SRR9715743	Root	14.622

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.976
SRR8749028	MeJA induced 9h	18.339
SRR8749029	MeJA induced 9h	9.582
SRR8749030	Uninduced	7.340
SRR8749031	Uninduced	1.401
SRR8749032	Uninduced	2.094

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	31.007
SRR8400027	Control-Root	44.534