Gene detail

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Gene detail information of Glyur001912s00034130.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30860.1	3.00E-82	glutathione S-transferase PHI 9
NR	XP_003617377.1	4.05E-134	Glutathione S-transferase [Medicago truncatula]
COG	YP_008152065.1	4.00E-46	glutathione S-transferase [Sorangium cellulosum So0157-2]
Swissprot	tr\|O80852\|GSTF9_ARATH	4.00E-103	Glutathione S-transferase F9
trEMBL	tr\|G7K3B1\|G7K3B1_MEDTR	2.00E-134	Glutathione S-transferase, amino-terminal domain protein {ECO:0000313\|EMBL:AET00336.1}

Sequence

Transcript Sequence

>Glyur001912s00034130.1
CCAATGCATCTTGTCTTTTTCTGTGTTGAAGACTGTGGTTGACAATATCTTCACATGTAGACGCACTAATAAAAAGTGAACCGACTAAGTTTTGATCAAACCTGAATAATAAATTGTTCTTCTTCCCCTTCTCTCTCTCTCTCTCTCTCTCTTGTTGAAGGATTGTTTTCAACAGAAACCATGGTAGTGAAAGTTTACGGCCCCCACTGTGCTGCAACCAAACGGGTGTTGGTTTGTCTGGTTGAGAAGGAAATNGAGTTTGAGGTTGTCCCTCTTAATGTTCTTAATGGGGAACATAAGGATCCTGAGTATCTCAAATTACAGCCCTTTGGAGTTGTTCCTGTCATTAAAGATGGAGATTATACCTTATTTGAATCAAGGGCAATAATGAGATATTATGCAGAAAAATACAGATCCCAAGGGGTTGAGTTACTAGGAAAGACAATAGAAGAGAGGGGTCTAGTGGAACAGTGGTTAGAAGTNGAAGCACACAACTTTCACCCACCAGCTTACAACTTGACCATTCATGTTCTGTTTCCTTCATTAATTGGCAGCAATCCAGATCCCAAGGTGATTGAAGAGAGTGAAGCAAAGCTGGGGAAGGTGTTGGACATTTATGAGGAGAGGCTTTCAAAGAGCAAGTATTTGGCTGGGGATTTCTTCAGCCTTGCTGATATTGGCCACCTTCCNTTTACTGATTATATTGTGAACAATATGGGGAAAGGACACTTGATAAAGGAGAGGAAATATGTCAGTGCCTGGTGGGATGATATTAGCAGTAGACCATCATGGAAGAAGGTTCTGAAGTTATACAGTCCTCCAATCTAGTTGCTAAGAGAACATCATGGGAGCTGAAATTAATTAATATAATGTTTGAACATGTTGGTCAAGAATAAATGAGCTTTTACCAAATTCCAGGTGGAGTTAGGAACAGAGTGGNATGTGTTGAATTTGTTCCTTCTCTCCTTGCATTTTCAGTTGAGTTGAATTTCTGGGTGTGTTGATGCTATTTGCTTACTTCTTGTTACCCTC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01912	9921	11401	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00799	GST, gst	EC:2.5.1.18	Glutathione metabolism	map00480
			Metabolism of xenobiotics by cytochrome P450	map00980
			Drug metabolism - cytochrome P450	map00982
			Chemical carcinogenesis	map05204
			Fluid shear stress and atherosclerosis	map05418
			Platinum drug resistance	map01524

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001912s00034130.1	PF02798.15	GST_N	6	74	4.30E-15
Glyur001912s00034130.1	PF00043.20	GST_C	122	202	2.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.334
SRR1783600	control	50.107
SRR1783602	moderate drought stress	56.128
SRR1811619	moderate drought stress	56.794

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	101.562
DRR006520	Root Summer glycyrrhizin high producing strain	100.015
DRR006521	Root Winter glycyrrhizin high producing strain	235.343
DRR006522	Root Winter glycyrrhizin high producing strain	227.895
DRR006523	Root Summer glycyrrhizin low producing strain	41.123
DRR006524	Root Summer glycyrrhizin low producing strain	42.365
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.491
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.556

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	168.289
SRR2868004	Drought Stress(Tissue:root)	113.918
SRR2967015	Control (Tissue:root)	154.203

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	77.995
SRR9715740	Leave	35.615
SRR9715741	Leave	71.775
SRR9715739	Root	329.494
SRR9715742	Root	234.940
SRR9715743	Root	265.009

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.570
SRR8749028	MeJA induced 9h	44.888
SRR8749029	MeJA induced 9h	83.404
SRR8749030	Uninduced	36.315
SRR8749031	Uninduced	39.352
SRR8749032	Uninduced	38.236

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	316.103
SRR8400027	Control-Root	337.696