Gene detail information of Glyur001914s00041265.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44920.2 | 4.00E-53 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | ACU23086.1 | 1.12E-87 | unknown [Glycine max] |
| COG | YP_007063917.1 | 8.00E-15 | pentapeptide repeat-containing protein [Calothrix sp. PCC 7507] |
| Swissprot | tr|O22160|TL15A_ARATH | 5.00E-66 | Thylakoid lumenal 15 kDa protein 1, chloroplastic (Precursor) |
| trEMBL | tr|C6TJJ6|C6TJJ6_SOYBN | 4.00E-88 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU23086.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01914 | 45956 | 52198 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.989 |
| SRR1783600 | control | 1.778 |
| SRR1783602 | moderate drought stress | 0.833 |
| SRR1811619 | moderate drought stress | 1.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.248 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.083 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.172 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.168 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.292 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.997 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.831 |
| SRR2967015 | Control (Tissue:root) | 0.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.227 |
| SRR9715740 | Leave | 24.057 |
| SRR9715741 | Leave | 11.138 |
| SRR9715739 | Root | 0.044 |
| SRR9715742 | Root | 0.037 |
| SRR9715743 | Root | 0.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.510 |
| SRR8749028 | MeJA induced 9h | 0.081 |
| SRR8749029 | MeJA induced 9h | 0.404 |
| SRR8749030 | Uninduced | 0.065 |
| SRR8749031 | Uninduced | 0.122 |
| SRR8749032 | Uninduced | 0.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.128 |
| SRR8400027 | Control-Root | 1.991 |