Gene detail

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Gene detail information of Glyur001916s00041247.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
NR	XP_004515730.1	PREDICTED: homeobox-leucine zipper protein ROC6-like [Cicer arietinum]
Swissprot	tr\|Q0WV12\|ANL2_ARATH	Homeobox-leucine zipper protein ANTHOCYANINLESS 2
trEMBL	tr\|V7BBY4\|V7BBY4_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW15372.1}

Sequence

Transcript Sequence

>Glyur001916s00041247.1
CTGCAGCAAAGGAAAATAATGGAGGGCCATGGTGAGATGGGTCTTATTGGAGAGAATTTTGATTCTGGTTTGATGGGGAGGATGAGGGATGATGAGTATGAGAGTAGGTCTGGGAGTGATAATTTTGATGGTGCTTCTGGTGATGATCAAGATGCCGGCGATGATCAGCGGCAGAACAAGANGAAGAAGTACCATAGACACACTCCTAATCAAATTCAGGAGCTCGAAGCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGATCAGATCTTAGTAAGAGGCTCGGCTTGGAGAATAAGCAAGAAAATGAGAAGCTCCGAGCTGAGAACAGCGTGATGAAGGAAGCTATGGCGAATCCAATATGCAGCAGCTGTGGTGGCCCTGCCATTCCTGGCCAAATCTCAATGGAGGAACACCAGATTAGGATTGAAAACGCCCGGCTGAAGGATGAATTGAACCGAATATGTACCTTGGCAAACAAGTTCCTTGGCCGGCCACTCTCGTCGCTGGCCAGTCCCATGGCTATGCCAACCCCGAATTCTGGTCTGGAACTTGCTATTGGAAGGAATGGGGTTGGTGGTTCAAGCAATTTTAGCATGTCCTTGCCAATGGGACTTGAGATGGGAGATGGAGTTTTGGGCACTCCTCCACCTACACTGTCTGGANTTAGATCGCCAATGGGATTGATGGGAAATGAAGTCCAGACTGAGAGATCTATGCTTATAGATCTTGCATTGGCTGCTATGGATGAACTGATTAAGATGGCTCAGCCGGATAGCCCTCTTTGGATTAAGAGTTCGGACGATGGGAAGGAAGTATTGAACCATGAGGAGTATGCAAGGATTGGTTCTGCNTATCTCGGTCCAAAACCCAATGGTTATGTAACTGAGGCTACAAGAGAAACTGGGGATCGATGGTCAGAGATGTTTCCATCTATGATTGCTAGAGCTGTCACACTCGATGTAATATCTAGTGGCATGGGCGGAACCAGAAACGGAGCTTTGCAAGTGATGCATGCTGAGGTTCAATTGCCGTCTCCGTTAGTCCCCGTTCGTCAAATGAGTTTCCTCAGGTTTTGCAAGCAGCATGCGGAAGGTGTGTGGGCTGTGGTNGATGTTGCACTTGACATNGGCCGTAATACTACCGATGCAAACNAATTCATGAGCTGTAAGAGGCTTCCTTCTGGCTGTGTTGTGCAGGATACACCCAATGGTTTCTGCAAGATTACTTGGGTTGATCACTCCCAATATGATGAGAGTGTTGTCAACCAACTCTATCGCCCGTTGGTCAGTTCCGGAATTGGCTTTGGTGCTCATAGATGGGTTGCAACTCTCCAAAGGCAATGTGAATGCCTTGCGATCCTCATGTCCTCTTCCTTACCATCCGATGACCCCACAGCTTTAAGCCAAGCTGGTAGGAGAAGCACGTTGAAGCTCGCGCAACGCATGACCGATTACTTCTGGTCTGGGGTTTGTGCTTCGTCTGCGTGCAAGTGGGACCTCATTCACATTGGTGCCATGGGTGATAATGAAGTGAAGATAATGTCCCGGAAACATGTTGATGGCCCTGGCGAGGCTCCTGGCATTGTCCTGAGTGCTGCGACCTCCGTTTGGATGCCGGTGTCGCGGCAAAGGGTGTTTGACTTCCTGCGCGAGGCGCGGTTGAGAGGCGAATGGGATGTTTTGTCCAATGGCGGATCAATGCAGGAGATGCTCCATATTGCTAAAGGACAAGGACATGGAAATTGTGTTTCTATCCTTCGTGCTAGTAATGCTGCCAGCAGCAACGAGAGCAACGTGCTATATCTTCAAGATTCATGGACCGATAGCTCCGGCTCAATGATCGTGTATTCCCCAATCAGTGTGCAATTCTTGAACATGGTGATGAGTGGTGGAGATTCTTCATATGTTTCTCTCTTGCCCTCAGGCTTTGCAATTCTTCCAGATGGCCATTCAAACAACGGAACATCAAGCGATGGCGGCAGCGGTGGNGAAGGTGGTGGCGGCGGAAGCCTACTTACAGTCGGGTTACAAATGTTGCTGAATAATAATGTTGCGCCGGCTAAGCTCACAGTGGAGTCGGTTGATACNGTTAATGCACTCATCTCATGCACCATTCAGAAGATCAAAGATGCACTTGGTGTTGCATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01916	34769	40130	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0008289 lipid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001916s00041247.1	PF00046.24	Homeobox	62	103	2.60E-09
Glyur001916s00041247.1	PF01852.14	START	246	453	1.10E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.170
SRR1783600	control	0.192
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.197
DRR006520	Root Summer glycyrrhizin high producing strain	0.198
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.085
DRR006524	Root Summer glycyrrhizin low producing strain	0.058
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.403
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.339

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.034
SRR2868004	Drought Stress(Tissue:root)	0.554
SRR2967015	Control (Tissue:root)	1.047

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.011
SRR9715740	Leave	1.477
SRR9715741	Leave	1.642
SRR9715739	Root	0.393
SRR9715742	Root	1.889
SRR9715743	Root	1.585

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.235
SRR8749028	MeJA induced 9h	3.203
SRR8749029	MeJA induced 9h	3.254
SRR8749030	Uninduced	1.555
SRR8749031	Uninduced	0.358
SRR8749032	Uninduced	0.293

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.535
SRR8400027	Control-Root	0.642