Gene detail

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Gene detail information of Glyur001924s00034863.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17420.1	0	Cellulose synthase family protein
NR	XP_003527198.1	0	PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming]-like [Glycine max]
COG	YP_001865112.1	1.00E-08	cellulose synthase [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9SWW6\|CESA7_ARATH	0	Cellulose synthase A catalytic subunit 7 [UDP-forming]
trEMBL	tr\|I1KDI6\|I1KDI6_SOYBN	0	Cellulose synthase {ECO:0000256\|RuleBase:RU361116}

Sequence

Transcript Sequence

>Glyur001924s00034863.1
ATGGAAGCCAGTGCTGGACTGGTTGCAGGGTCACACAATCGCAATGAGCTTGTGGTCATTCATGGCCACGAAGAGCACAAGCCTTTGAAGAACTTGGATGGACAGGTGTGTGAGATTTGTGGTGATGGCGTGGGGCTTACGGTGGACGGAGACTTGTTCGTGGCCTGTAATGAGTGTGGTTTTCCGGTGTGCCGGCCGTGCTATGAGTATGAAAGGAGAGAAGGGAGCCAGCTTTGTCCACAGTGCAAGACCAGATACAAGCGCCTCAAAGATGATGATGAGGAGGACGTGGATGATATTGAGCATGAGTTCAATATTGATGACCAAAAGAACAAGCATGGCCATATTGCAGAGGCCATGCTTCAAGGGAAGATGAGCTATGGAAGAGGTCTTGAAGATGATGAGAATGCCCATTTCCCACCTGTAATTTCTGGTGGTCGTTCTCGACCTGTAAGTGGGGAGTTCCCAATATCATCTCACAGTTATGGAGAACAGATGTTATCTTCTTCAGTGCATAAAAGAGTGCATCCATATCCGGTGTCTGAACCTGGAAGTGCAAGATGGGATGAAAAGAAAGAGGATGGATGGAAAGATAGAATGGATGACTGGAAATTGCAGCAAGGCAACTTGGGACCTGAACCTGATGAAGATCTAGATGCAGCCATGCAGCCACTGTCAAGAAAAGTACCAATAGCATCTAGCAAAATCAATCCATATAGGATGGTGATTGTGGCACGGCTTGTTATACTTGCTTTCTTCCTCAGATACAGAATTTTGAACCCAGTACATGATGCACTGGGGCTATGGCTGACCTCTATTGTGTGTGAAATCTGGTTTGCTTTTTCATGGATTCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCAGTCAGTACTGTGGATCCCATGAAGGAACCTCCTCTGGTTACAGCAAATACTATTCTTTCAATCTTGGCCATGGATTACCCTGTTGATAAGATATCATGCTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAATCCCTGTCAGAAACTGCAGAGTTTGCTAGGAAATGGGTACCATTTTGTAAGAAATTTTCTATAGAACCTCGAGCACCTGAGATGTACTTCAGTGAGAAGATTGACTACCTTAAGGACAAAGTGCAACCCACCTTTGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAAGCACAGAAAGTTCCTCCAGGAGGGTGGATCATGCAGGATGGGACACCATGGCCAGGGAACAACACCAAGGATCATCCAGGGATGATTCAAGTCTTTCTTGGCAGCAGTGGAGGTCTTGATACCGAAGGAAACCAGCTTCCTCGCCTTGTTTATGTTTCCAGAGAGAAAAGGCCTGGTTTCCAACATCATAAGAAAGCCGGTGCCATGAATGCTCTGGTTCGGGTCTCTGCTGTTCTCACAAATGCTCCTTTCATGTTGAACTTGGATTGTGATCATTATGTCAATAACAGCAAGGCTGTCCGAGAGGCCATGTGCTTCTTGATGGACCCTCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAGAGATTCGATGGCATCGATACTCACGATCGTTATGCCAATAGGAACACCGTCTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTGGGCACAGGGTGTGTTTTTAGGAGGCAAGCTTTATATGGTTATAATCCTCCCAAGGGTCCCAAACGTCCAAAAATGAAGAACAAGCTTGCAAAGAGTGATGCAAATGGAGAGGCTGCAAGCCTAAAAGGGATGGATGATGACAAAGAGATGCTCATGTCCCAGATGAATTTTGAGAAGAAATTTGGGCAGTCATCTATATTTGTGACTTCTACCTTGATGGAAGAAGGTGGTGTGCCCCCTTCCTCCAGTCCAGCTGGCCTGCTTAAAGAAGCCATTCATGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGATTGGTTGGATCTATGGATCTATAACAGAGGATATCCTAACAGGTTTTAAGATGCATTGCCGTGGGTGGAGGTCCATTTACTGTATGCCAAAGAGGGCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATAGACTCAACCAGGAGAAGAAGCTGAAGTGGCTTGAGAGATTGTCCTATGCTAACACAACTGTCTACCCCTTCACCTCCATACCCCTAGTTGCCTATTGTGTTCTTCCTGCAGTTTGCTTGCTCACTGACAAATTCATCATGCCACCGATAAGCACTTTTGCTGGCTTGTACTTTATTGCTCTCTTCTCTTCAATCATTGCAACTGGTGTTCTTGAGTTGAAATGGAGTGGGGTGAGCATAGAGGAATGGTGGAGGAATGAGCAGTTCTGGGTCATTGGTGGTGTATCAGCACACCTCTTTGCAGTGATACAAGGTCTTCTCAAGGTCCTAGCTGGAATTGACACCAACTTCACTGTCACATCAAAGGCAACAGATGATGAGGATTTTGGAGAACTATACACCTTCAAGTGGACAACCCTTCTAATCCCTCCAACCACAATCTTGATCATCAACATGGTTGGTGTTGTAGCTGGTATCTCAGATGCAATAAACAATGGGTACCAATCATGGGGACCACTATTTGGAAAACTCTTCTTTTCCTTCTGGGCAAAACCGTACACCAACCATTGTGGTGATTTGGTCAGTGCTATTGGCTTCTATTTTCTCATTGCTTTGGGTGAGAATTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01924	28305	35223	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

cellular_component GO:0016020 membrane molecular_function GO:0005515 protein binding GO:0008270 zinc ion binding GO:0016760 cellulose synthase (UDP-forming) activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001924s00034863.1	PF14569.1	zf-UDP	27	99	4.50E-36
Glyur001924s00034863.1	PF03552.9	Cellulose_synt	304	604	2.10E-188
Glyur001924s00034863.1	PF03552.9	Cellulose_synt	611	734	1.40E-59
Glyur001924s00034863.1	PF03552.9	Cellulose_synt	735	913	2.30E-93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.995
SRR1783600	control	5.021
SRR1783602	moderate drought stress	3.311
SRR1811619	moderate drought stress	3.494

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.483
DRR006520	Root Summer glycyrrhizin high producing strain	11.362
DRR006521	Root Winter glycyrrhizin high producing strain	1.365
DRR006522	Root Winter glycyrrhizin high producing strain	1.331
DRR006523	Root Summer glycyrrhizin low producing strain	7.300
DRR006524	Root Summer glycyrrhizin low producing strain	7.235
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.159
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.078

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	27.614
SRR2868004	Drought Stress(Tissue:root)	16.458
SRR2967015	Control (Tissue:root)	15.983

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	7.938
SRR9715740	Leave	7.802
SRR9715741	Leave	3.456
SRR9715739	Root	1.423
SRR9715742	Root	15.566
SRR9715743	Root	12.002

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.373
SRR8749028	MeJA induced 9h	0.132
SRR8749029	MeJA induced 9h	0.230
SRR8749030	Uninduced	0.362
SRR8749031	Uninduced	0.125
SRR8749032	Uninduced	0.247

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	15.843
SRR8400027	Control-Root	21.666