Gene detail information of Glyur001924s00034864.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17420.1 | 0 | Cellulose synthase family protein |
| NR | XP_004509860.1 | 0 | PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming]-like [Cicer arietinum] |
| COG | NP_487797.1 | 5.00E-23 | cellulose synthase catalytic subunit [Nostoc sp. PCC 7120] |
| Swissprot | tr|Q9SWW6|CESA7_ARATH | 0 | Cellulose synthase A catalytic subunit 7 [UDP-forming] |
| trEMBL | tr|G7LFG6|G7LFG6_MEDTR | 0 | Cellulose synthase {ECO:0000256|RuleBase:RU361116} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01924 | 38804 | 45401 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001924s00034864.1 | PF14569.1 | zf-UDP | 26 | 105 | 4.20E-44 |
| Glyur001924s00034864.1 | PF03552.9 | Cellulose_synt | 261 | 371 | 2.00E-53 |
| Glyur001924s00034864.1 | PF03552.9 | Cellulose_synt | 372 | 507 | 3.00E-68 |
| Glyur001924s00034864.1 | PF03552.9 | Cellulose_synt | 549 | 859 | 3.80E-150 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.608 |
| SRR1783600 | control | 3.733 |
| SRR1783602 | moderate drought stress | 6.122 |
| SRR1811619 | moderate drought stress | 6.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.125 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.148 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.042 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.033 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.194 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.707 |
| SRR2967015 | Control (Tissue:root) | 10.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.337 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.581 |
| SRR9715742 | Root | 12.738 |
| SRR9715743 | Root | 10.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 33.550 |
| SRR8400027 | Control-Root | 47.270 |