Gene detail information of Glyur001929s00041466.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17430.1 | 6.00E-124 | O-fucosyltransferase family protein |
| NR | XP_003543971.1 | 0 | PREDICTED: uncharacterized protein LOC100788337 [Glycine max] |
| trEMBL | tr|I1LWT4|I1LWT4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G06400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01929 | 37738 | 40463 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001929s00041466.1 | PF10250.4 | O-FucT | 84 | 356 | 6.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.733 |
| SRR1783600 | control | 6.840 |
| SRR1783602 | moderate drought stress | 4.434 |
| SRR1811619 | moderate drought stress | 4.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.426 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.439 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.948 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.941 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.905 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.319 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.615 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.483 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.649 |
| SRR2967015 | Control (Tissue:root) | 4.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.277 |
| SRR9715740 | Leave | 6.189 |
| SRR9715741 | Leave | 8.552 |
| SRR9715739 | Root | 8.916 |
| SRR9715742 | Root | 12.201 |
| SRR9715743 | Root | 10.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.548 |
| SRR8749028 | MeJA induced 9h | 4.572 |
| SRR8749029 | MeJA induced 9h | 3.925 |
| SRR8749030 | Uninduced | 2.536 |
| SRR8749031 | Uninduced | 2.256 |
| SRR8749032 | Uninduced | 1.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.914 |
| SRR8400027 | Control-Root | 5.904 |