Gene detail information of Glyur001930s00032116.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10200.1 | 2.00E-90 | GATA type zinc finger transcription factor family protein |
| NR | AFK47041.1 | 4.08E-137 | unknown [Lotus japonicus] |
| Swissprot | tr|Q94JX5|WLIM1_ARATH | 2.00E-114 | LIM domain-containing protein WLIM1 {ECO:0000305} |
| trEMBL | tr|I3T3E9|I3T3E9_LOTJA | 2.00E-137 | Uncharacterized protein {ECO:0000313|EMBL:AFK47041.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01930 | 19230 | 21232 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LIM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001930s00032116.1 | PF00412.17 | LIM | 10 | 64 | 1.80E-12 |
| Glyur001930s00032116.1 | PF00412.17 | LIM | 110 | 164 | 3.20E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 191.859 |
| SRR1783600 | control | 192.581 |
| SRR1783602 | moderate drought stress | 159.247 |
| SRR1811619 | moderate drought stress | 158.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 185.654 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 183.446 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 97.034 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 97.454 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.098 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 107.976 |
| SRR2868004 | Drought Stress(Tissue:root) | 58.880 |
| SRR2967015 | Control (Tissue:root) | 68.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.901 |
| SRR9715740 | Leave | 1.200 |
| SRR9715741 | Leave | 3.308 |
| SRR9715739 | Root | 22.093 |
| SRR9715742 | Root | 46.207 |
| SRR9715743 | Root | 38.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.094 |
| SRR8749028 | MeJA induced 9h | 5.569 |
| SRR8749029 | MeJA induced 9h | 6.967 |
| SRR8749030 | Uninduced | 1.004 |
| SRR8749031 | Uninduced | 1.804 |
| SRR8749032 | Uninduced | 1.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 140.921 |
| SRR8400027 | Control-Root | 198.933 |