Gene detail information of Glyur001930s00032118.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12350.1 | 2.00E-89 | F-box family protein |
| NR | XP_004498990.1 | 0 | PREDICTED: F-box protein At3g12350-like [Cicer arietinum] |
| Swissprot | tr|Q84WW1|FB140_ARATH | 3.00E-127 | F-box protein At3g12350 |
| trEMBL | tr|G7IBC4|G7IBC4_MEDTR | 0 | F-box protein {ECO:0000313|EMBL:AES59308.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01930 | 22548 | 24883 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001930s00032118.1 | PF00646.28 | F-box | 20 | 58 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.936 |
| SRR1783600 | control | 9.866 |
| SRR1783602 | moderate drought stress | 9.800 |
| SRR1811619 | moderate drought stress | 9.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.577 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.318 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.269 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.116 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.194 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.847 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.848 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.068 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.601 |
| SRR2967015 | Control (Tissue:root) | 14.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.523 |
| SRR9715740 | Leave | 4.480 |
| SRR9715741 | Leave | 6.217 |
| SRR9715739 | Root | 11.496 |
| SRR9715742 | Root | 7.048 |
| SRR9715743 | Root | 7.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.419 |
| SRR8749028 | MeJA induced 9h | 12.959 |
| SRR8749029 | MeJA induced 9h | 24.358 |
| SRR8749030 | Uninduced | 8.807 |
| SRR8749031 | Uninduced | 14.595 |
| SRR8749032 | Uninduced | 13.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.274 |
| SRR8400027 | Control-Root | 21.949 |