Gene detail

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Gene detail information of Glyur001935s00034594.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02070.1	1.00E-96	Cysteine proteinases superfamily protein
NR	XP_004489740.1	2.83E-150	PREDICTED: OTU domain-containing protein DDB_G0284757-like isoform X4 [Cicer arietinum]
trEMBL	tr\|A0A072U777\|A0A072U777_MEDTR	5.00E-149	Cysteine proteinase superfamily protein {ECO:0000313\|EMBL:KEH25619.1}

Sequence

Transcript Sequence

>Glyur001935s00034594.1
CGCACCTTTCAAAAACGCGAAATGGAGAACATCTTCTCCATTTGATTCTCTCACACTTGCTGCATCCTCCTCCTTCTTCATCAACACCCATTGCCTTTCATCATTCAATCGCATCAGAATCCCAGGNTCAGTGGCTGTGGATTGTGGGGGAATTTTGGCCTTAGGTTGAAGCTTCCAGAAATTGTCAGCTCTGGATATGATGAACGGATCACAGACTCGGTACTGGGGTGAAAGTTCCGGTTCGACTTCCTATAGCAGTCAGCAGGAGGATGTTGACGATGACCAGATGATCGCTCTTGTGCTGTCGGAAGAGTATGCCAAATTGGATGGATCAGTTGGCCGGCGCCTTTCCAACTTGGCACCTGTTCCTCATGTGCCCCGGATAAATTCCTTCATTCCCACCATAAATGATGCCAGTATGGATCACCATCGACTGCTTCAGAGGTTGAATGTTTATGGTCTTTGTGAAGTTAAAGTATCTGGAGATGGAAATTGTCAGTTCCGTGCACTTTCAGATCAGCTGTATAGGTCACCTGAACACCACAAGCATGTTCGTAAAGATATTGTAAAACAGCTCAAAGATCACCGTCAACTATATGAATGCTATGTACCGATGAAATACAAGAAATATTACAAAAAAATGGCTAAATCTGGAGAATGGGGAGACCATGTTACCTTACAGGCAGCTTCTGATAAGTTTGCAGCGAAGATATGCCTTCTGACATCATTCAGAGATACGTGTTTTATCGAAATTATGCCATTGTACCAAGCACCAAAGCGAGAACTGTGGTTGAGCTTCTGGTCTGAGGTTCATTACAATTCGCTTTATGAAATTCGAGATGCACCAATCCAGCATAAACCAAGGAGGAAACACTGGTTGTTCTAGGAGAGGTAGATATAAAGCATCAAGGTCATAAGATGCAGTGCTGTGTATAGCTCATTGCATGGTGCAACTACAAAGTAGCTATTACATTATTCAGTGAAGGTAAACTGCCAAATTTGGAAAATATATTTGCCAAAGTATCAATGATATATGTTGTGGCCATTTTTTTCCCCTTGTATATAAGGAGGAACCCGAAGGGGGAGAAATCACTTGTCTGATTTTTCTCTTTACCAAACTTATTTACTGTATAGTTATGATAATTTTTTAATTTTGGTTTTATCATGCCTTTTTTAATCAAGTGGAGCAGCTCGGTATGATTTGTATATTATTTAATTTAATTTAATTGCTTTTTAAAGCAAATTGTGTATTGAATTTACTAGAGTGACAAAACTGTTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01935	12645	19721	-

Gene family

Gene family	subfamily
Ubiquitin Family	OTU

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001935s00034594.1	PF02338.14	OTU	96	207	3.70E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.640
SRR1783600	control	7.468
SRR1783602	moderate drought stress	6.309
SRR1811619	moderate drought stress	6.161

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.515
DRR006520	Root Summer glycyrrhizin high producing strain	13.519
DRR006521	Root Winter glycyrrhizin high producing strain	14.884
DRR006522	Root Winter glycyrrhizin high producing strain	14.683
DRR006523	Root Summer glycyrrhizin low producing strain	39.832
DRR006524	Root Summer glycyrrhizin low producing strain	40.191
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.857
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.523

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	18.143
SRR2868004	Drought Stress(Tissue:root)	20.336
SRR2967015	Control (Tissue:root)	21.182

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	11.314
SRR9715740	Leave	12.450
SRR9715741	Leave	12.145
SRR9715739	Root	5.500
SRR9715742	Root	9.805
SRR9715743	Root	8.532

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.658
SRR8749028	MeJA induced 9h	41.090
SRR8749029	MeJA induced 9h	33.793
SRR8749030	Uninduced	38.420
SRR8749031	Uninduced	36.719
SRR8749032	Uninduced	28.646

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	13.877
SRR8400027	Control-Root	17.095