Gene detail information of Glyur001936s00032193.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12480.1 | 3.00E-56 | nuclear factor Y, subunit C11 |
| NR | AFK42220.1 | 1.45E-136 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9ZVL3|NFYC3_ARATH | 3.00E-12 | Nuclear transcription factor Y subunit C-3 |
| trEMBL | tr|I3SPM8|I3SPM8_LOTJA | 5.00E-137 | Uncharacterized protein {ECO:0000313|EMBL:AFK42220.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01936 | 10063 | 14143 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YC |
| EAR motif-containing Proteins | NF-YC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001936s00032193.1 | PF00808.18 | CBFD_NFYB_HMF | 8 | 71 | 2.30E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 56.920 |
| SRR1783600 | control | 57.052 |
| SRR1783602 | moderate drought stress | 60.543 |
| SRR1811619 | moderate drought stress | 60.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 60.855 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 59.818 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 85.804 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 84.600 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 80.548 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 81.039 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 51.130 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 51.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 74.431 |
| SRR2868004 | Drought Stress(Tissue:root) | 90.366 |
| SRR2967015 | Control (Tissue:root) | 93.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 50.307 |
| SRR9715740 | Leave | 55.077 |
| SRR9715741 | Leave | 58.897 |
| SRR9715739 | Root | 15.077 |
| SRR9715742 | Root | 36.322 |
| SRR9715743 | Root | 32.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 100.425 |
| SRR8749028 | MeJA induced 9h | 106.115 |
| SRR8749029 | MeJA induced 9h | 91.179 |
| SRR8749030 | Uninduced | 117.528 |
| SRR8749031 | Uninduced | 101.771 |
| SRR8749032 | Uninduced | 75.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 76.671 |
| SRR8400027 | Control-Root | 66.134 |