Gene detail information of Glyur001943s00040961.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_006587654.1 | 2.79E-12 | PREDICTED: carbon catabolite repressor protein 4 homolog 4-like isoform X3 [Glycine max] |
| trEMBL | tr|I1L5A0|I1L5A0_SOYBN | 8.00E-13 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G35040.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01943 | 26945 | 29325 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12603 | CNOT6, CCR4 | EC:3.1.13.4 | RNA degradation | map03018 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.124 |
| SRR1783600 | control | 4.234 |
| SRR1783602 | moderate drought stress | 6.526 |
| SRR1811619 | moderate drought stress | 7.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.648 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.504 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.740 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.638 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.083 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.910 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.389 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.775 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.122 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.669 |
| SRR2967015 | Control (Tissue:root) | 2.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.832 |
| SRR9715740 | Leave | 3.813 |
| SRR9715741 | Leave | 3.705 |
| SRR9715739 | Root | 1.370 |
| SRR9715742 | Root | 1.711 |
| SRR9715743 | Root | 2.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.189 |
| SRR8749028 | MeJA induced 9h | 4.772 |
| SRR8749029 | MeJA induced 9h | 5.034 |
| SRR8749030 | Uninduced | 0.663 |
| SRR8749031 | Uninduced | 0.889 |
| SRR8749032 | Uninduced | 1.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.302 |
| SRR8400027 | Control-Root | 7.511 |