Gene detail information of Glyur001956s00039081.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G37490.1 | 2.00E-85 | ARM repeat superfamily protein |
| NR | XP_003530079.1 | 0 | PREDICTED: U-box domain-containing protein 21-like [Glycine max] |
| COG | YP_001957952.1 | 3.00E-11 | hypothetical protein Aasi_0852 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q5PNY6|PUB21_ARATH | 3.00E-112 | U-box domain-containing protein 21 |
| trEMBL | tr|I1KJ87|I1KJ87_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G11960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01956 | 44182 | 45498 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001956s00039081.1 | PF04564.10 | U-box | 25 | 96 | 3.10E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.242 |
| SRR1783600 | control | 0.293 |
| SRR1783602 | moderate drought stress | 0.202 |
| SRR1811619 | moderate drought stress | 0.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.862 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.652 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.798 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.713 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.551 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.478 |
| SRR2967015 | Control (Tissue:root) | 33.660 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 51.834 |
| SRR9715740 | Leave | 10.701 |
| SRR9715741 | Leave | 57.473 |
| SRR9715739 | Root | 12.217 |
| SRR9715742 | Root | 62.460 |
| SRR9715743 | Root | 49.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.148 |
| SRR8749028 | MeJA induced 9h | 8.639 |
| SRR8749029 | MeJA induced 9h | 13.014 |
| SRR8749030 | Uninduced | 292.597 |
| SRR8749031 | Uninduced | 123.435 |
| SRR8749032 | Uninduced | 41.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.678 |
| SRR8400027 | Control-Root | 15.007 |