Gene detail information of Glyur001963s00029199.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G73450.1 | 0 | Protein kinase superfamily protein |
| NR | XP_006584918.1 | 0 | PREDICTED: uncharacterized protein LOC100802148 isoform X2 [Glycine max] |
| Swissprot | tr|P51567|AFC2_ARATH | 5.00E-13 | Serine/threonine-protein kinase AFC2 |
| trEMBL | tr|I1KQN3|I1KQN3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G06160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01963 | 253 | 17420 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:4.5.8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001963s00029199.1 | PF00069.20 | Pkinase | 401 | 486 | 1.70E-06 |
| Glyur001963s00029199.1 | PF00069.20 | Pkinase | 507 | 635 | 4.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.949 |
| SRR1783600 | control | 1.993 |
| SRR1783602 | moderate drought stress | 2.687 |
| SRR1811619 | moderate drought stress | 2.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.138 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.120 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.064 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.924 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.523 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.516 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.724 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.780 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.919 |
| SRR2967015 | Control (Tissue:root) | 5.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.347 |
| SRR9715740 | Leave | 3.175 |
| SRR9715741 | Leave | 1.334 |
| SRR9715739 | Root | 0.900 |
| SRR9715742 | Root | 0.952 |
| SRR9715743 | Root | 1.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.569 |
| SRR8749028 | MeJA induced 9h | 3.824 |
| SRR8749029 | MeJA induced 9h | 3.117 |
| SRR8749030 | Uninduced | 2.578 |
| SRR8749031 | Uninduced | 3.219 |
| SRR8749032 | Uninduced | 2.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.994 |
| SRR8400027 | Control-Root | 3.787 |