Gene detail information of Glyur001966s00032583.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G19440.103-ketoacyl-CoA synthase 4
NRXP_003549437.10PREDICTED: 3-ketoacyl-CoA synthase 4-like [Glycine max]
COGNP_285649.17.00E-14chalcone synthase [Deinococcus radiodurans R1]
Swissprottr|Q9LN49|KCS4_ARATH03-ketoacyl-CoA synthase 4
trEMBLtr|I1MXW6|I1MXW6_SOYBN03-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold019661784419397+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15397KCS EC:2.3.1.199 Fatty acid elongation map00062


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process

GO:0008610  lipid biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001966s00032583.1PF08392.7FAE1_CUT1_RppA1053941.70E-136
Glyur001966s00032583.1PF08541.5ACP_syn_III_C4114911.40E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.153
SRR1783600control0.132
SRR1783602moderate drought stress0.243
SRR1811619moderate drought stress0.244

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.140
DRR006520Root Summer glycyrrhizin high producing strain0.138
DRR006521Root Winter glycyrrhizin high producing strain1.045
DRR006522Root Winter glycyrrhizin high producing strain0.996
DRR006523Root Summer glycyrrhizin low producing strain0.141
DRR006524Root Summer glycyrrhizin low producing strain0.142
DRR006525Leaf Summer glycyrrhizin high producing strain0.820
DRR006526Leaf Summer glycyrrhizin high producing strain0.608

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.387
SRR2868004Drought Stress(Tissue:root)0.191
SRR2967015Control (Tissue:root)0.066

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.418
SRR9715740Leave0.386
SRR9715741Leave0.752
SRR9715739Root0.160
SRR9715742Root0.318
SRR9715743Root0.407

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.866
SRR8749028MeJA induced 9h1.161
SRR8749029MeJA induced 9h0.340
SRR8749030Uninduced0.457
SRR8749031Uninduced0.567
SRR8749032Uninduced0.656

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.205
SRR8400027Control-Root0.120

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved