Gene detail information of Glyur001966s00032585.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G19440.103-ketoacyl-CoA synthase 4
NRNP_001267518.10uncharacterized protein LOC100797855 [Glycine max]
COGNP_285649.13.00E-12chalcone synthase [Deinococcus radiodurans R1]
Swissprottr|Q9LN49|KCS4_ARATH03-ketoacyl-CoA synthase 4
trEMBLtr|I1M8B7|I1M8B7_SOYBN03-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold019664130342811+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15397KCS EC:2.3.1.199 Fatty acid elongation map00062


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0003824  catalytic activity

GO:0016746  transferase activity, transferring acyl groups

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001966s00032585.1PF08392.7FAE1_CUT1_RppA893789.20E-137
Glyur001966s00032585.1PF02797.10Chal_sti_synt_C3864732.30E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.637
SRR1783600control0.630
SRR1783602moderate drought stress0.274
SRR1811619moderate drought stress0.267

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.174
DRR006520Root Summer glycyrrhizin high producing strain0.121
DRR006521Root Winter glycyrrhizin high producing strain0.365
DRR006522Root Winter glycyrrhizin high producing strain0.433
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain13.331
DRR006526Leaf Summer glycyrrhizin high producing strain13.312

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.384
SRR2868004Drought Stress(Tissue:root)0.595
SRR2967015Control (Tissue:root)0.078

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.225
SRR9715740Leave24.558
SRR9715741Leave13.662
SRR9715739Root1.957
SRR9715742Root0.462
SRR9715743Root0.741

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.799
SRR8400027Control-Root0.590

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved