Gene detail information of Glyur001972s00034432.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G10050.10L-O-methylthreonine resistant 1
NRXP_003542539.10PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Glycine max]
COGYP_003848428.10threonine dehydratase, biosynthetic [Gallionella capsiferriformans ES-2]
Swissprottr|Q9ZSS6|THD1_ARATH0Threonine dehydratase biosynthetic, chloroplastic (Precursor)
trEMBLtr|I1LZD0|I1LZD0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G21230.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold019721926524115+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01754E4.3.1.19, ilvA, tdcB EC:4.3.1.19 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glycine, serine and threonine metabolismmap00260
Valine, leucine and isoleucine biosynthesismap00290


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process

GO:0009097  isoleucine biosynthetic process


molecular_function

GO:0004794  L-threonine ammonia-lyase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001972s00034432.1PF00291.20PALP1184041.90E-75
Glyur001972s00034432.1PF00585.13Thr_dehydrat_C4175069.10E-24
Glyur001972s00034432.1PF00585.13Thr_dehydrat_C5105899.40E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.910
SRR1783600control23.867
SRR1783602moderate drought stress20.882
SRR1811619moderate drought stress20.940

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.925
DRR006520Root Summer glycyrrhizin high producing strain21.791
DRR006521Root Winter glycyrrhizin high producing strain9.389
DRR006522Root Winter glycyrrhizin high producing strain9.229
DRR006523Root Summer glycyrrhizin low producing strain18.151
DRR006524Root Summer glycyrrhizin low producing strain18.693
DRR006525Leaf Summer glycyrrhizin high producing strain10.743
DRR006526Leaf Summer glycyrrhizin high producing strain10.780

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.546
SRR2868004Drought Stress(Tissue:root)23.287
SRR2967015Control (Tissue:root)22.022

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.919
SRR9715740Leave13.575
SRR9715741Leave16.801
SRR9715739Root23.623
SRR9715742Root36.903
SRR9715743Root38.419

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h43.898
SRR8749028MeJA induced 9h27.208
SRR8749029MeJA induced 9h33.219
SRR8749030Uninduced19.581
SRR8749031Uninduced19.735
SRR8749032Uninduced24.167

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.520
SRR8400027Control-Root31.949

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved