Gene detail information of Glyur001972s00034435.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03795.1 | 2.00E-112 | Exostosin family protein |
| NR | XP_004497579.1 | 0 | PREDICTED: probable glycosyltransferase At5g03795-like [Cicer arietinum] |
| COG | YP_677520.1 | 4.00E-07 | hypothetical protein CHU_0899 [Cytophaga hutchinsonii ATCC 33406] |
| Swissprot | tr|Q9FFN2|GLYT3_ARATH | 8.00E-137 | Probable glycosyltransferase At5g03795 |
| trEMBL | tr|G7I9D2|G7I9D2_MEDTR | 0 | Exostosin family protein {ECO:0000313|EMBL:AES60658.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01972 | 30537 | 32817 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001972s00034435.1 | PF03016.10 | Exostosin | 112 | 275 | 7.10E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.524 |
| SRR1783600 | control | 1.585 |
| SRR1783602 | moderate drought stress | 0.262 |
| SRR1811619 | moderate drought stress | 0.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.068 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.158 |
| SRR9715743 | Root | 0.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.564 |
| SRR8749028 | MeJA induced 9h | 0.398 |
| SRR8749029 | MeJA induced 9h | 0.744 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.225 |
| SRR8400027 | Control-Root | 0.164 |