Gene detail information of Glyur001975s00035596.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02810.1 | 6.00E-101 | pseudo-response regulator 7 |
| NR | XP_006594103.1 | 0 | PREDICTED: two-component response regulator-like APRR7-like isoform X1 [Glycine max] |
| COG | YP_007467367.1 | 4.00E-08 | serine phosphatase RsbU, regulator of sigma subunit [Desulfocapsa sulfexigens DSM 10523] |
| Swissprot | tr|Q93WK5|APRR7_ARATH | 6.00E-152 | Two-component response regulator-like APRR7 |
| trEMBL | tr|K7LZK3|K7LZK3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G19871.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01975 | 10063 | 26043 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Pseudo ARR-B |
| EAR motif-containing Proteins | Pseudo ARR-B |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001975s00035596.2 | PF00072.19 | Response_reg | 112 | 182 | 1.90E-14 |
| Glyur001975s00035596.2 | PF06203.9 | CCT | 668 | 714 | 7.20E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.599 |
| SRR1783600 | control | 34.985 |
| SRR1783602 | moderate drought stress | 29.364 |
| SRR1811619 | moderate drought stress | 28.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 39.557 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 39.281 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 71.547 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 69.137 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 45.229 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 44.617 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.359 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 59.468 |
| SRR2868004 | Drought Stress(Tissue:root) | 60.897 |
| SRR2967015 | Control (Tissue:root) | 77.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 51.393 |
| SRR9715740 | Leave | 72.317 |
| SRR9715741 | Leave | 67.959 |
| SRR9715739 | Root | 2.291 |
| SRR9715742 | Root | 24.191 |
| SRR9715743 | Root | 19.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.454 |
| SRR8749028 | MeJA induced 9h | 35.926 |
| SRR8749029 | MeJA induced 9h | 33.321 |
| SRR8749030 | Uninduced | 42.619 |
| SRR8749031 | Uninduced | 38.469 |
| SRR8749032 | Uninduced | 34.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.031 |
| SRR8400027 | Control-Root | 24.859 |