Gene detail information of Glyur001975s00035598.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G18610.2 | 5.00E-128 | Protein kinase superfamily protein |
| NR | XP_003625560.1 | 0 | Serine/threonine protein kinase PBS1 [Medicago truncatula] |
| COG | YP_003523895.1 | 5.00E-25 | serine/threonine protein kinase [Sideroxydans lithotrophicus ES-1] |
| Swissprot | tr|Q0WRY5|CDL1_ARATH | 1.00E-159 | Serine/threonine-protein kinase CDL1 {ECO:0000305} |
| trEMBL | tr|I1LYZ3|I1LYZ3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G19860.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01975 | 31119 | 34769 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.2.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001975s00035598.1 | PF00069.20 | Pkinase | 88 | 300 | 7.30E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.393 |
| SRR1783600 | control | 28.437 |
| SRR1783602 | moderate drought stress | 27.537 |
| SRR1811619 | moderate drought stress | 27.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.745 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.482 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.508 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.694 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.079 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.568 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.530 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.486 |
| SRR2868004 | Drought Stress(Tissue:root) | 23.706 |
| SRR2967015 | Control (Tissue:root) | 21.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.422 |
| SRR9715740 | Leave | 21.093 |
| SRR9715741 | Leave | 22.714 |
| SRR9715739 | Root | 7.808 |
| SRR9715742 | Root | 18.801 |
| SRR9715743 | Root | 15.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.171 |
| SRR8749028 | MeJA induced 9h | 12.396 |
| SRR8749029 | MeJA induced 9h | 4.644 |
| SRR8749030 | Uninduced | 2.828 |
| SRR8749031 | Uninduced | 0.959 |
| SRR8749032 | Uninduced | 1.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 35.612 |
| SRR8400027 | Control-Root | 32.208 |