Gene detail information of Glyur001978s00029867.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01310.1 | 7.00E-25 | APRATAXIN-like |
| NR | XP_007140229.1 | 5.25E-48 | hypothetical protein PHAVU_008G095100g [Phaseolus vulgaris] |
| Swissprot | tr|Q7XAQ6|LAX_ORYSJ | 1.00E-30 | Transcription factor LAX PANICLE |
| trEMBL | tr|V7B5U7|V7B5U7_PHAVU | 2.00E-48 | Uncharacterized protein {ECO:0000313|EMBL:ESW12223.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01978 | 11588 | 12166 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001978s00029867.1 | PF00010.21 | HLH | 48 | 88 | 2.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.550 |
| SRR1783600 | control | 1.413 |
| SRR1783602 | moderate drought stress | 1.466 |
| SRR1811619 | moderate drought stress | 1.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.471 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.650 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.382 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.382 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.596 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.269 |
| SRR2967015 | Control (Tissue:root) | 1.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.354 |
| SRR9715740 | Leave | 1.296 |
| SRR9715741 | Leave | 0.546 |
| SRR9715739 | Root | 0.106 |
| SRR9715742 | Root | 0.423 |
| SRR9715743 | Root | 0.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.116 |
| SRR8749029 | MeJA induced 9h | 0.291 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.265 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.664 |
| SRR8400027 | Control-Root | 4.234 |